View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18326_low_5 (Length: 238)
Name: NF18326_low_5
Description: NF18326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18326_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42522375 - 42522595
Alignment:
| Q |
1 |
ctaataagtgaaagatggagtataattaaatcaccaaaatcatttgagccttgatgtaactaatggaataatgtatagttgaatattattgatttaatta |
100 |
Q |
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| T |
42522375 |
ctaataagtgacagatggagtataattaaatcaccaaaatcatttgagccttgatgtaactaatggaataatgtatagttgaatattattgatttaatta |
42522474 |
T |
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| Q |
101 |
atcaattaggttttttggtatttgattcatgcagattgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagttt |
200 |
Q |
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| T |
42522475 |
atcaattaggttttttggtatttgattcatgcaggttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagttt |
42522574 |
T |
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| Q |
201 |
ggttgcctggtgtatgagcac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42522575 |
ggttgcctggtgtatgagcac |
42522595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42530587 - 42530803
Alignment:
| Q |
1 |
ctaataagtgaaagatggagtataattaaatcaccaaaatcatttgagccttgatgtaactaatggaataatgtatagttgaatattattga-tttaatt |
99 |
Q |
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||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| ||||||||| ||||||| |
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| T |
42530587 |
ctaataagtgacagatggagtataa---aatcaccaaaattatttgagccttgatgcaactaacggaataaactatagttga-tattattgaatttaatt |
42530682 |
T |
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| Q |
100 |
aatcaattaggttttttggtatttgattcatgcagattgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtt |
199 |
Q |
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| T |
42530683 |
aatca-ttaggttttttggtatttgattcatgcaggttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtt |
42530781 |
T |
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| Q |
200 |
tggttgcctggtgtatgagcac |
221 |
Q |
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| T |
42530782 |
tggttgcctggtgtatgagcac |
42530803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 1273756 - 1273847
Alignment:
| Q |
130 |
tgcagattgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgcctggtgtatgagcac |
221 |
Q |
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||||| |||| || || ||| |||||||||||||| |||||||||||||||| ||||| |||||||| | || ||||| || ||||||||| |
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| T |
1273756 |
tgcaggttgaggtattaagttgcataaggcatccaaacatggttctcctcctaggagcctgtccggaatacggctgccttgtttatgagcac |
1273847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 35083387 - 35083317
Alignment:
| Q |
136 |
ttgaagtgttgagtagcataaggcatccacacatggttctcctccttggagcatgtccggagtttggttgc |
206 |
Q |
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|||||||||||||| | ||||| |||||| ||||||| || || | |||||||||||||| ||||||||| |
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| T |
35083387 |
ttgaagtgttgagttgtataagacatccaaacatggtccttctgttgggagcatgtccggaatttggttgc |
35083317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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