View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18326_low_6 (Length: 228)
Name: NF18326_low_6
Description: NF18326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18326_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42522106 - 42522333
Alignment:
| Q |
1 |
catttggagacagtgtattaaatagtcctgcaaggtacagaagatacactattgaagaaatagaagaagcaacaaattacttttccaactcattgaagat |
100 |
Q |
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| T |
42522106 |
catttggagacagtgtattaaatagtcctgcaaggtacagaagatacactattgaagaaatagaagaagcaacaaattacttttccaactcattgaagat |
42522205 |
T |
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| Q |
101 |
tggtgaaggaggttatggaccagtctatagggccgaactagatcacaccgcagttgctataaaagtgttaaaacctgatgcggctcaaggacgctcacag |
200 |
Q |
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| T |
42522206 |
tggtgaaggaggttatggaccagtctatagggccgaactagatcacaccgcagttgctataaaagtgttaaaacctgatgcggctcaaggacgctcacag |
42522305 |
T |
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| Q |
201 |
tttcaacaggaggtactgatattataaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42522306 |
tttcaacaggaggtactgatattataaa |
42522333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 42530320 - 42530547
Alignment:
| Q |
1 |
catttggagacagtgtattaaatagtcctgcaaggtacagaagatacactattgaagaaatagaagaagcaacaaattacttttccaactcattgaagat |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42530320 |
catttggagatagtgtattaaatagtcctgcaaggtatagaagatacactattgaagaaatagaagaagcaacaaattacttttccaactcattgaagat |
42530419 |
T |
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| Q |
101 |
tggtgaaggaggttatggaccagtctatagggccgaactagatcacaccgcagttgctataaaagtgttaaaacctgatgcggctcaaggacgctcacag |
200 |
Q |
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| T |
42530420 |
tggtgaaggaggttatggaccagtctatagggccgaactagatcacaccgcagttgctataaaagtgttaaaacctgatgcggctcaaggacgctcacag |
42530519 |
T |
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| Q |
201 |
tttcaacaggaggtactgatattataaa |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42530520 |
tttcaacaggaggtactgatattataaa |
42530547 |
T |
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