View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18327_low_4 (Length: 222)
Name: NF18327_low_4
Description: NF18327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18327_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 32244446 - 32244238
Alignment:
| Q |
1 |
aactgcagtcatgattccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaag |
100 |
Q |
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| T |
32244446 |
aactgcagtcatgattccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatat--cttaatgtgatgtgtaggaaattaag |
32244349 |
T |
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| Q |
101 |
aatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccac |
200 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244348 |
aattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccac |
32244250 |
T |
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| Q |
201 |
tccacaggttct |
212 |
Q |
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|||||||||||| |
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| T |
32244249 |
tccacaggttct |
32244238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 32250155 - 32249947
Alignment:
| Q |
1 |
aactgcagtcatgattccatatgtaaagataccaacaaatatacactctgtgatgtctctgtgcacatatatatcttaatgtgatgtgtaggaaattaag |
100 |
Q |
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||||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
32250155 |
aactgcagtcaggattccatatgtgaagatagcaacaaatataccctctgtgatgtctctg--cacatatctatcataatgtgatgtgtaggaaattaag |
32250058 |
T |
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| Q |
101 |
aatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtcccttcctcactcttctcttcttactataaatcaccac |
200 |
Q |
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|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
32250057 |
aattcataggcatgcatggtgaagaatgtcatgaact-agcaacctacactgtgtgacgtgtccctttctcacgcttctcttcttactataaatcaccac |
32249959 |
T |
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| Q |
201 |
tccacaggttct |
212 |
Q |
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|||||||||||| |
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| T |
32249958 |
tccacaggttct |
32249947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 32254912 - 32254767
Alignment:
| Q |
67 |
atatatatcttaatgtgatgtgtaggaaattaagaatttataggcatgcatgctgaagaatgtcatgaactcagcaacctacactgtgtgacgtgtccct |
166 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32254912 |
atatatataataatgtgatgtgtaggaaattaagaattcataggcatgcatggtgaagaatgtcatgaacttagcaacctacactgtgtgacgtgtccct |
32254813 |
T |
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| Q |
167 |
tcctcactcttctcttcttactataaatcaccactccacaggttct |
212 |
Q |
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| T |
32254812 |
ttctcacgcttctcttcttactataaatcaccactccacaggttct |
32254767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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