View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_high_12 (Length: 434)
Name: NF18328_high_12
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 4 - 418
Target Start/End: Original strand, 52186302 - 52186710
Alignment:
| Q |
4 |
agtattttcctaattttgttttacaaattaaattccaccaactaaattaggctatacgttnnnnnnnntagctttacgtnnnnnnnnnnnnnnnngaact |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
52186302 |
agtattttcctaattttgttttacaaattaaattccaccaactaaattaggctatacgttaaaaaaaaaagctttacgtaaaaaaaaa-------gaact |
52186394 |
T |
|
| Q |
104 |
aaactagctttgcttaagnnnnnnnnn-ctaagatttttgtgaaacaaaaagagagttggtggagattatctaacagacagaggacattatcgtccaaag |
202 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186395 |
aaactagctttgcttaagaaaaaaaaaactaagatttttgtgaaacaaaaagagagttggtggagattatctaacagacagaggacattatcgtccaaag |
52186494 |
T |
|
| Q |
203 |
aaaaacaataaaaatctctggagaaagtagaaactaaaaaggaagaattttgcaaggtatcgctcgcgactcgcgagaggcacactagggttacaaggta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52186495 |
aaaaacaataaaaatctctggagaaagtagaaactaaaaaggaagaattttgcaaggtatcgctcgcgactcgcgagaggcacactagggttacaaggta |
52186594 |
T |
|
| Q |
303 |
tccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgactttgcccttaggttaaatttcttcat |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52186595 |
tccatccatccatccaacttggccctcttctatgtttctactctattaggactttcaacttcttttctcttgacttggcccttaggttaaatttcttcat |
52186694 |
T |
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| Q |
403 |
cggttagttacatgtt |
418 |
Q |
| |
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|||||||||||||||| |
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| T |
52186695 |
cggttagttacatgtt |
52186710 |
T |
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