View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_high_17 (Length: 347)
Name: NF18328_high_17
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 330
Target Start/End: Original strand, 41319543 - 41319860
Alignment:
| Q |
12 |
aagaaattgcaaagtagaaaagcagtttcacacccaccgaaccaaaacgggtccacaaaataaacagacagtgtaataataagtgaaccacgtttcatga |
111 |
Q |
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| T |
41319543 |
aagaaattgcaaagtagaaaagcagtttcacacccaccgaaccaaaacgggtccacaaaataaacagacagtgtaataataagtgaaccacgtttcatga |
41319642 |
T |
|
| Q |
112 |
taagacactgacagcacaaatcnnnnnnnncaccgagttaaatcactcacctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatac |
211 |
Q |
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| T |
41319643 |
taagacactgacagcacaaatcaaaaaaa-caccgagttaaatcactcacctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatac |
41319741 |
T |
|
| Q |
212 |
aagcatgcattctatcatctgagccatacaatcctggataccgttgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41319742 |
aagcatgcattctatcatctgagccatacaatcctggataccgttgaatacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagc |
41319841 |
T |
|
| Q |
312 |
aaatccaccaccaccataa |
330 |
Q |
| |
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||||||||||||||||||| |
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| T |
41319842 |
aaatccaccaccaccataa |
41319860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 187 - 330
Target Start/End: Complemental strand, 11092226 - 11092083
Alignment:
| Q |
187 |
agtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggataccgttgaatacaccgatcctgcattttgtgaagcg |
286 |
Q |
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| T |
11092226 |
agtggaataccaagctcagccatacaagcttgaatcctatcatcagaaccatacaaaccaggatacctttgaatacacctatcttgcattttctccaaag |
11092127 |
T |
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| Q |
287 |
ctttcgccaaaggatagcttatagcaaatccaccaccaccataa |
330 |
Q |
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| T |
11092126 |
caacagccaaaggataacttatagcaaatccaccaccaccataa |
11092083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 2619540 - 2619370
Alignment:
| Q |
160 |
acctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggataccgttgaa |
259 |
Q |
| |
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||||||||||| || |||| || || ||||||||||| ||||||||||||||||| ||||||| |||||| || ||||| | ||||||||| | |||| |
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| T |
2619540 |
acctggtgaaaaccgatttcctttgtaagtggaacaccaagttcagccatacaagcttgcattcgatcatcagaaccataaagtcctggatatctatgaa |
2619441 |
T |
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| Q |
260 |
tacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataa |
330 |
Q |
| |
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|||| |||||||||||||| || ||||| |||||| ||| || |||||||||||||||||||||||| |
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| T |
2619440 |
tacaacgatcctgcattttcactagagcttttgccaaaccataactaatagcaaatccaccaccaccataa |
2619370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 22776348 - 22776518
Alignment:
| Q |
160 |
acctggtgaaaccccgtttctttagtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggataccgttgaa |
259 |
Q |
| |
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|||||||||||||| | ||| || || | ||||||||| || |||||||| ||||| |||||||||||||| ||||||||| | || || ||||||| |
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| T |
22776348 |
acctggtgaaaccctgcttccttggttaatggaacacctagctcagccatgcaagcttgcattctatcatcactgccatacaaagcagggtaacgttgaa |
22776447 |
T |
|
| Q |
260 |
tacaccgatcctgcattttgtgaagcgctttcgccaaaggatagcttatagcaaatccaccaccaccataa |
330 |
Q |
| |
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|||| ||||||||||| || |||| | || |||||||| ||||||||||||||||| |||||||||||| |
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| T |
22776448 |
tacaacgatcctgcatctttgcaagctccttagccaaagggtagcttatagcaaatcctccaccaccataa |
22776518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 330
Target Start/End: Original strand, 29612989 - 29613135
Alignment:
| Q |
184 |
gtgagtggaacaccgagttcagccatacaagcatgcattctatcatctgagccatacaatcctggataccgttgaatacaccgatcctgcattttgtgaa |
283 |
Q |
| |
|
||||| |||||||| || |||||||||||||| || || ||||||||||| ||||||||| || |||| || |||||||| ||| |||||| | | | |
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| T |
29612989 |
gtgagaggaacaccaagctcagccatacaagcttgaatcctatcatctgacccatacaatttagggtacctttcaatacacctatcttgcattctctcca |
29613088 |
T |
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| Q |
284 |
gcgctttcgccaaaggatagcttatagcaaatccaccaccaccataa |
330 |
Q |
| |
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| T |
29613089 |
atgcaacagccaaaggataactaatagcaaatccaccaccaccataa |
29613135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 40945094 - 40945131
Alignment:
| Q |
292 |
gccaaaggatagcttatagcaaatccaccaccaccata |
329 |
Q |
| |
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||||| ||||| |||||||||||||||||||||||||| |
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| T |
40945094 |
gccaatggataacttatagcaaatccaccaccaccata |
40945131 |
T |
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