View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_high_2 (Length: 696)
Name: NF18328_high_2
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 14 - 678
Target Start/End: Complemental strand, 28336243 - 28335585
Alignment:
| Q |
14 |
cacagaccattttggggaacgagaaaaaaggcacaatatccactaaactgcgcactaaggatcatatcaacagaccgaccactatgagcaggaggagggt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28336243 |
cacaaaccattttggggaacgagaaaaaaggcacaatatccactaaactgcgcactaaggatcatatcaacagacc----actatgagcaggaggagggt |
28336148 |
T |
|
| Q |
114 |
gaagttgaatgtgtaggatcttctgagcaagg-agttatcatgtacaatgtaaaattagtcgagagagggctcgtcactttaggccacaatgttcggcta |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28336147 |
gaagttgaatgtgtaggatcttctgagcaagggagttatcatgtacaatgtaaaattagtcgagagagggctcgtcactttaggccacaatgttcggcta |
28336048 |
T |
|
| Q |
213 |
attttgcataatttttgctataaaatactcggttcatacactataatagacacactcgatcaatcaaacgggctatttttgcatttttatccttttatca |
312 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28336047 |
attt-gcataatttttgctataaaatactcggttcatacactataatagacacactcgatcaatcaaacgagctatttttgcatttttatccttttatca |
28335949 |
T |
|
| Q |
313 |
ttgtagctnnnnnnnctcagacaaccgtatctaacactctagtgtggaagttaggaaacccacatatgtgacacaaagttcctctctcaacgtcaaacac |
412 |
Q |
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| T |
28335948 |
t-gtagctaaaaaa-ctcaaacaaccgtatctaacactctagtgtggaagttagcaaacccacatatgtgagacaaagttcctctctcaacgtcaaacac |
28335851 |
T |
|
| Q |
413 |
ttgaatcaaagagaatcacaattgagaaaacttaaccgaacctgggctaatttcacacttccataaacaacatctaaaaatatttaagttgatagccaaa |
512 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28335850 |
ttgaatcaaagagaatcacaattgaggaaacttaactgaacctaggctaatttcacacttccataaacaacatctaaaaatatttaagttgatagccaaa |
28335751 |
T |
|
| Q |
513 |
cacaaaaaatagttaatttaggtttaacagaataactggtagccgaacaaatgatagtagatctgaaaccagtcgattacaaaagaggaagatctttctt |
612 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
28335750 |
cacgaaaaatagttaatttaggtttaacagaataactggtagccgaacaaatgatagtagaactgaaaccagtcgattacaaaaaaggaagatctttctt |
28335651 |
T |
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| Q |
613 |
aatccactaaagttcacaaaggtcgtgggagtgtcagaatcaatcaaagacacaatgaactttaca |
678 |
Q |
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| T |
28335650 |
aatccactaaagttcacaaaggtcgtgagagtgtcagaatcaatcaaagacacaatgaactttaca |
28335585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 453
Target Start/End: Complemental strand, 32702471 - 32702421
Alignment:
| Q |
403 |
cgtcaaacacttgaatcaaagagaatcacaattgagaaaacttaaccgaac |
453 |
Q |
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|||||| |||||||| ||| |||||||||||||||| | |||||||||||| |
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| T |
32702471 |
cgtcaatcacttgaaacaaggagaatcacaattgaggacacttaaccgaac |
32702421 |
T |
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