View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_high_20 (Length: 310)
Name: NF18328_high_20
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 21083592 - 21083877
Alignment:
| Q |
16 |
atgacaataattatacaccatgtacttgctttggacccattgcatggccatatattgttgagggctaagactaccatatccagatggagagacagatggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21083592 |
atgacaataattatacaccatgtacttgctttggacccattgcatggccatatattgttgagggctaagactaccatatccagatggagagacagatggt |
21083691 |
T |
|
| Q |
116 |
gattggcatgaggcaggactttgaatggtacaaccttgtaatttgaagtttgtgtaccttccaacaaagggttgatatttataatcagctttgtattttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
21083692 |
gattggcatgaggcaggactttgaatggtacaaccttgtaatttgaagttagtgtaccttccaacaaagggttggtatttataatcagctttatattttc |
21083791 |
T |
|
| Q |
216 |
catcttctgttgcccaagaagatgcatcccaaattgatccatagagatacattggtcttgtagggtaggtggcatcacttttccta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21083792 |
catcttctgttgcccaagaagatgcatcccaaattgatccatagagatacattggtcttgtagggtaggtggcatcacttttccta |
21083877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 141 - 301
Target Start/End: Complemental strand, 40872082 - 40871922
Alignment:
| Q |
141 |
tggtacaaccttgtaatttgaagtttgtgtaccttccaacaaagggttgatatttataatcagctttgtattttccatcttctgttgcccaagaagatgc |
240 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||| |||||||| || |||||| |||||||||||||||| ||||| ||||| | |||||| |
|
|
| T |
40872082 |
tggtacaaccttgtagtttgaagttttggtatcttccaatgaagggttggtaagtataatttgctttgtattttccattctctgtagcccatgcagatgc |
40871983 |
T |
|
| Q |
241 |
atcccaaattgatccatagagatacattggtcttgtagggtaggtggcatcacttttccta |
301 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||| |||| | || |||||||| |||||| |
|
|
| T |
40871982 |
atcccagattgatccatacacatacattggtcttgaagggaatgttgcatcactcttccta |
40871922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 27684117 - 27684233
Alignment:
| Q |
158 |
ttgaagtttgtgtaccttccaacaaagggttgatatttataatcagctttgtattttccatcttctgttgcccaagaagatgcatcccaaattgatccat |
257 |
Q |
| |
|
||||||||||||||| || ||||||| ||||| || || ||||||||||||||||||||||||||||||||||| || || ||||||||||| || |||| |
|
|
| T |
27684117 |
ttgaagtttgtgtactttgcaacaaaaggttggtacttgtaatcagctttgtattttccatcttctgttgcccatgatgaagcatcccaaatagacccat |
27684216 |
T |
|
| Q |
258 |
agagatacattggtctt |
274 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
27684217 |
aaacccacattggtctt |
27684233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 273
Target Start/End: Complemental strand, 41270376 - 41270280
Alignment:
| Q |
177 |
caacaaagggttgatatttataatcagctttgtattttccatcttctgttgcccaagaagatgcatcccaaattgatccatagagatacattggtct |
273 |
Q |
| |
|
||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| || || |||||||| ||||| ||||| || |||||||||| |
|
|
| T |
41270376 |
caacaaatggttggtatctgtaatcagctttgtattttccatcttctgttgcccatgatgaagcatcccatattgaaccataaagccacattggtct |
41270280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University