View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_high_3 (Length: 692)
Name: NF18328_high_3
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 645; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 45281973 - 45282661
Alignment:
| Q |
1 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45281973 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
45282072 |
T |
|
| Q |
101 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctatctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282073 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
45282172 |
T |
|
| Q |
201 |
gtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaattgccctttgccaggctttcttacaatgatcgtagagtgttggatcaaggtag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45282173 |
gtattcaaattcatcgtgtctgatccgtctgcagtaattgtgttgaattgccctttgccaggctttcttacaatgattgtagagtgttggatcaaggtag |
45282272 |
T |
|
| Q |
301 |
cagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45282273 |
cagatgatccaaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgat |
45282372 |
T |
|
| Q |
401 |
atggcaacccaccaaagcaaacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtccttgcctttcca |
500 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45282373 |
atggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttcca |
45282472 |
T |
|
| Q |
501 |
atgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282473 |
atgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctata |
45282572 |
T |
|
| Q |
601 |
tcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagta |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282573 |
tcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataagta |
45282661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 1 - 687
Target Start/End: Original strand, 45273729 - 45274416
Alignment:
| Q |
1 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273729 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
45273828 |
T |
|
| Q |
101 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctatctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45273829 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
45273928 |
T |
|
| Q |
201 |
gtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaattgccctttgccaggctttcttacaatgatcgtagagtgttggatcaaggtag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45273929 |
gtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaattgccctttgccaggctttcttacaatgattgtagagtgttggatcaaggtag |
45274028 |
T |
|
| Q |
301 |
cagatgatccaaagatgaagtcaacgg-taccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccagga |
399 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45274029 |
cagatgatccaaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacga |
45274128 |
T |
|
| Q |
400 |
tatggcaacccaccaaagcaaacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtccttgcctttcc |
499 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45274129 |
tatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttcc |
45274228 |
T |
|
| Q |
500 |
aatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctat |
599 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | |
|
|
| T |
45274229 |
aatgaaccctattgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatattt |
45274328 |
T |
|
| Q |
600 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag |
687 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||| |
|
|
| T |
45274329 |
ctcttttcaatgcgagttatgttttcttcaaaaataaattttgagagtgatgctactttttcttatatactctttcttcaatcataag |
45274416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 45293313 - 45293904
Alignment:
| Q |
1 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
100 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45293313 |
catagtaacatgtgttttcaaaatgttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgc |
45293412 |
T |
|
| Q |
101 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctatctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
45293413 |
taaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaatacca |
45293512 |
T |
|
| Q |
201 |
gtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaattgccctttgccaggctttcttacaatgatcgtagagtgttggatcaaggtag |
300 |
Q |
| |
|
|||||||| || || || ||| |||||||||||||||||||||||||| | | |||| ||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
45293513 |
gtattcaatttattcacgtatgacccgtctgcggtaattgtgttgaattgatttggggaaggcattcttacgatgatcgtagagtcttggatcaaggtgg |
45293612 |
T |
|
| Q |
301 |
cagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggat |
400 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| || ||||||||||||| | || |||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
45293613 |
cagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggat |
45293712 |
T |
|
| Q |
401 |
atggcaacccaccaaagcaaacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtccttgcctttcca |
500 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45293713 |
atggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttcca |
45293812 |
T |
|
| Q |
501 |
atgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggc---tatatatgtcaatgttatat |
589 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293813 |
atgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 45302273 - 45302864
Alignment:
| Q |
1 |
catagtaacatgtgttgtgattttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgc |
100 |
Q |
| |
|
|||||||||||||||| | | ||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45302273 |
catagtaacatgtgttttcaaaatgttctccttgccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgc |
45302372 |
T |
|
| Q |
101 |
taaatacttccatggtctgcccaagtaagaccgaattgtgaatctatctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaatacca |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
45302373 |
taaaaccttccatggtctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaatacca |
45302472 |
T |
|
| Q |
201 |
gtattcaaattcatcgtgtctgatccgtctgcggtaattgtgttgaattgccctttgccaggctttcttacaatgatcgtagagtgttggatcaaggtag |
300 |
Q |
| |
|
|||||||| || || || ||| |||||||||||||||||||||||||| | | |||| ||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
45302473 |
gtattcaatttattcacgtatgacccgtctgcggtaattgtgttgaattgatttggggaaggcattcttacgatgatcgtagagtcttggatcaaggtgg |
45302572 |
T |
|
| Q |
301 |
cagatgatccaaagatgaagtcaacggtaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggat |
400 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| || ||||||||||||| | || |||||| ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
45302573 |
cagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggat |
45302672 |
T |
|
| Q |
401 |
atggcaacccaccaaagcaaacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtccttgcctttcca |
500 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45302673 |
atggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttcca |
45302772 |
T |
|
| Q |
501 |
atgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggc---tatatatgtcaatgttatat |
589 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302773 |
atgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 687
Target Start/End: Original strand, 45270217 - 45270887
Alignment:
| Q |
21 |
ttttgttctccttgccaaatggtccatccatctgaatgaatgaaatcaccaatggtggattccatgacgacagtctttgctaaatacttccatggtctgc |
120 |
Q |
| |
|
||||||||| || ||||| |||||||||||||| |||||| ||||||||||| ||||||||||||| ||| | ||||| | || | ||||||||||| |
|
|
| T |
45270217 |
ttttgttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtggattccatgatgactgcctttgattcattttgccatggtctgc |
45270316 |
T |
|
| Q |
121 |
ccaagtaagaccgaattgtgaatctatctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcgtgtc |
220 |
Q |
| |
|
|||||||||||| || ||||||| | || |||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| | |
|
|
| T |
45270317 |
ccaagtaagacctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattcaccagcgg |
45270416 |
T |
|
| Q |
221 |
tgatccgtctgcggtaattgtgttgaattgccctttg-cca-----ggct-ttcttacaatgatcgtagagtgttggatcaaggtagcagatgatccaaa |
313 |
Q |
| |
|
||||||||||||| |||| |||| ||| | | || || | || |||| || ||||| |||||| |||||||||||| ||||||| |||||| |
|
|
| T |
45270417 |
tgatccgtctgcgacaattacgttgtatt-cattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttccaaa |
45270515 |
T |
|
| Q |
314 |
gatgaagtcaacggtaccagagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccacc |
413 |
Q |
| |
|
||||||||||| |||||| |||| || ||| ||||||||| | || |||||| ||||||| ||||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
45270516 |
gatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccacc |
45270615 |
T |
|
| Q |
414 |
aaagcaaacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtccttgcctttccaatgaaccccattg |
513 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45270616 |
aaagcagacatatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattg |
45270715 |
T |
|
| Q |
514 |
cggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgtt |
613 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |
|
|
| T |
45270716 |
cggtgttggctgcatgcatggatgatcaattaattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtg |
45270812 |
T |
|
| Q |
614 |
agtt-atgttttcttcaaaaatgaattttgagagtgatgccactttttctcatatactctttcttcattcataag |
687 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||| ||| |||| ||| |||||| |||||||||||||| |
|
|
| T |
45270813 |
agttaatgtttttttcaaaaatgaattttgagagtgatgctactatttcacatctactctctcttcattcataag |
45270887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 600 - 687
Target Start/End: Original strand, 45293957 - 45294046
Alignment:
| Q |
600 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat--atactctttcttcattcataag |
687 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45294046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 600 - 687
Target Start/End: Original strand, 45302917 - 45303006
Alignment:
| Q |
600 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat--atactctttcttcattcataag |
687 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcatcattaccctttcttcattcataag |
45303006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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