View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_high_31 (Length: 255)
Name: NF18328_high_31
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 17189968 - 17189739
Alignment:
| Q |
11 |
atgaatagactctgaagtgtgttcaataacctgtttacattttccattatgaaaatatttattattttgcctgttgtaacaaactattttggttgattaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17189968 |
atgaatagactctgaagtgtgttcaataacctgtttacattttccattatgaaaatatttattattttgcctgttgtaacaaactattttggttgattaa |
17189869 |
T |
|
| Q |
111 |
tttaaattcatttttgcagatatggcgcatgagtgatttgctctacagaccagaggatgaggttttggcagagctggagaaattcaaatctcatgtggtg |
210 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17189868 |
tttaaatttatttttgcagatatggcgcatgagtgatttgctctacagaccagaggatgaggttttggcagagctggagaaattcaaatctcatgtggtg |
17189769 |
T |
|
| Q |
211 |
gcttgtgcagcaaagaccgacaaataattt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17189768 |
gcttgtgcagcaaagaccgacaaataattt |
17189739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 17180438 - 17180391
Alignment:
| Q |
190 |
aaattcaaatctcatgtggtggcttgtgcagcaaagaccgacaaataa |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17180438 |
aaattcaaatctcatgtggtggcttgtgcagcaaagaccgacaaataa |
17180391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 17180506 - 17180469
Alignment:
| Q |
25 |
aagtgtgttcaataacctgtttacattttccattatga |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17180506 |
aagtgtgttcaataacctgtttacattttccagtatga |
17180469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University