View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_high_4 (Length: 669)
Name: NF18328_high_4
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 10 - 616
Target Start/End: Original strand, 39578588 - 39579194
Alignment:
| Q |
10 |
catcatcataggaaatgaaattcttctcaatatgtttggaccgacaaagctaagcctagaaagtagatcctcaacaagaaaatcaatatatgttcaagat |
109 |
Q |
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| T |
39578588 |
catcatcataggaaatgaaattcttctcaatatgtttggaccgacaaagctaagcctagaaagtagatcctcaacaagaaaatcaatatatgttcaagat |
39578687 |
T |
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| Q |
110 |
ccaattaagtctaacttgagaaatatcaattatgtatgtaccctaaggtttataatagttctaagtgttacaaaagannnnnnnnnnnnnnnagaggaaa |
209 |
Q |
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| T |
39578688 |
ccaattaagtttaacttgagaaatatcaattatgtatgtaccctaaggtttataatagttctaagtgttacaaaagatttttttatttttttagaggaaa |
39578787 |
T |
|
| Q |
210 |
gtgttacaaaagattgaagagtgataattgtgacatatattgcataattgtgactatgtgtgcgtgcacgcgcacattgcataatcgtgagtatgtgtgc |
309 |
Q |
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| T |
39578788 |
gtgttacaaaagattgaagagtgataattgtgacatatattgcataattgtgagtatgtgtgcgtgcacgcgcacattgcataatcgtgagtatgtgtgc |
39578887 |
T |
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| Q |
310 |
atgcgtgcgcacgtgtttgtgtgtcggactgtcgcttattgtgtcatccttgaatgacttggtgttgtcccaccaatgtttgtctttgtcctttctaata |
409 |
Q |
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| T |
39578888 |
atgcgtgcgcacgcgtttgtgtgtcggactttcgcttattgtgtcatccttgaatgacttgttgttgtcccaccaatgtttgtctttgtcctttctaata |
39578987 |
T |
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| Q |
410 |
tatgaatgctttgtcgaggaaatatgttgtatcacccacaacaaatgcttttgattgaaataacaaaatgaaacatatattccttcnnnnnnnnntgaaa |
509 |
Q |
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| T |
39578988 |
tatgaatgctttgtcgaggaaatatgttgtatcacccacaacaaatgcttttgattgaaataacaaaatgaaacatatattccttcaaaaaaaaatgaaa |
39579087 |
T |
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| Q |
510 |
catatatgccatcaattgactgacaacattttacattgtaacatagaaaattgaggaaacaaatcaaacctagatgccatcaatcgactaacatcacttc |
609 |
Q |
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| T |
39579088 |
catatatgccatcaattgactgacaacatttcacattgtaacatagaaaattgaggaaacaaatcaaacctagatgccatcaattgactaacatcacttc |
39579187 |
T |
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| Q |
610 |
acattgt |
616 |
Q |
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||||||| |
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| T |
39579188 |
acattgt |
39579194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 35268986 - 35268927
Alignment:
| Q |
357 |
ccttgaatgacttggtgttgtcccaccaatgtttgtctttgtcctttctaatatatgaat |
416 |
Q |
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| T |
35268986 |
ccttgaatgacttgtacttgtcccaccaatgtttgcctctgtcctttcgaatagatgaat |
35268927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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