View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_high_6 (Length: 570)
Name: NF18328_high_6
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 272 - 554
Target Start/End: Original strand, 2419000 - 2419282
Alignment:
| Q |
272 |
ctatactttttaaaactcgttatccaaccctgatcaaccccaccgtccactagcagaacctatttaaagccagaacaaaactttgtatatcaaaatacaa |
371 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2419000 |
ctatattttttaaaactcgatatccaaccctgatcaaccccaccgtccactagcaggatctatttaaagccagaacaaaactttgtatatcaaaatacaa |
2419099 |
T |
|
| Q |
372 |
cttaaaacactcaataatacaacaaaaaacatattttgagattataactcacaaagattgaaactttaagcaatgaaagagttaaatcagatcaatggtt |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2419100 |
cttaaaacactcaataatacaacaaaaaacatattttgagattataactcacaaagattgaaactttaagcaatgaaagagttaaatcagatcaatggtt |
2419199 |
T |
|
| Q |
472 |
ggatcaaaaaagcttagatcattttagaatagaaagaaaagcaagaaaaacagagagagaggggatgaaaaataccaagtttt |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2419200 |
ggatcaaaaaagcttagatcattttagaatagaaagaaaagcaagaaaaacagagagagaggggatgaaaaataccaagtttt |
2419282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 2418767 - 2418946
Alignment:
| Q |
11 |
atcatcagatcgaaatagaccaaaataaaataataaaacagtaccatgctgaggaaatttccaccaccaccagcattaagcttatcaacctcatagatag |
110 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2418767 |
atcaccagatccaaatagaccaaaataaaataataaaacagtaccatgctgaggaaatttccaccaccaccagcattaagcttatcaacctcatagatag |
2418866 |
T |
|
| Q |
111 |
tagcatgaagagtaccatgaagatgaatttgtgccatttttcacctacaaatcacacaaccccatttctcatcagatcac |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2418867 |
tagcatgaagagtaccatgaagatgaatttgtgccatttttcacctacaaatcacacaaccccatttttcatcagatcac |
2418946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University