View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_high_7 (Length: 566)
Name: NF18328_high_7
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_high_7 |
 | |
|
| [»] scaffold0041 (4 HSPs) |
| | |
|
| [»] scaffold0645 (2 HSPs) |
| | |
|
| [»] scaffold0248 (2 HSPs) |
| | |
|
| [»] scaffold0007 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Complemental strand, 22973329 - 22972837
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22973329 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaa-ttacgaatggattgaaggaagt |
22973231 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22973230 |
a-tggttgggttgaaaaattggaagatgaaaacgcagaataagttgaatgagagagtttcgtcggatagatgaatcaatttttgttcccaaattatgaat |
22973132 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaa |
304 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
22973131 |
gaattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaagaaaacagttatgcagaagaa |
22973032 |
T |
|
| Q |
305 |
gaaaataatctggaa----nnnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcc |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22973031 |
gaaaataatctggaattttttttttttttttgaaaattaattaatggatcaatatgctaataacaaaagtataccggatcaatatatcaaacccatctcc |
22972932 |
T |
|
| Q |
401 |
tcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22972931 |
tcgtccattttttattgtggattactgttgtccatgttatagtgatgccacgtcaagatgggcagtttacccacctctttcccaaggcaatttag |
22972837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Original strand, 8205634 - 8206121
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8205634 |
gagagagaagaaacggtataagtgaagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaa-ttacgaatggattgaaggaagt |
8205732 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8205733 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagtttcgtcggatagatgaatcaatttttgttcccaaattatgaat |
8205832 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaa |
304 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
8205833 |
ggattgaaggaagaaatagttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaagaaaacagttatgcagaagaa |
8205932 |
T |
|
| Q |
305 |
gaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgt |
404 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8205933 |
gaaaataatctggaattttttttttt--aaaatcaattaatgggtcaatctgctgataacaaaagtataccgggtcaatatatcaaacccatctcctcgt |
8206030 |
T |
|
| Q |
405 |
ccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8206031 |
caattttttattgtggattactgttgtccatgttatagcgatgccacgtcaagatgggcagtttacccacctctttcccaaggcaatttag |
8206121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 173 - 495
Target Start/End: Complemental strand, 38083004 - 38082683
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
38083004 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttg |
38082905 |
T |
|
| Q |
273 |
atattggagaagaaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaa-gta |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38082904 |
atattggagaagaaagcagttatgcagaagaagaaaataatctggaaattttttttta--aaaattaattaatgggtcaatctgctaataacaaaaagta |
38082807 |
T |
|
| Q |
372 |
taccggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacc |
471 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
38082806 |
taccgggtcaatatatcaaacccatctcctcgtccattttttattgtggattactgttatccatgttatagtgatgccacgtcaagatgggcagtttacc |
38082707 |
T |
|
| Q |
472 |
cacctctttcccaagacaatttag |
495 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
38082706 |
cacctctttcccaaggcaatttag |
38082683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 22974258 - 22974395
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
22974258 |
gagagagaagaaacgatatgagtggagagtaaataccatggatgaatttgatgttgatgaatcaatttttttcc-aaattacgaatggattgaaggaaga |
22974356 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22974357 |
aatagttgggttgaaaaattgaaagatgaaaacgcagaa |
22974395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 38083832 - 38083969
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38083832 |
gagagagaagaaatgatatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttttcc-aaattacgaatggattgaaggaagt |
38083930 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38083931 |
aacggttaggttgaaaaattgaaagatgaaaacgcagaa |
38083969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 8204066 - 8203935
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8204066 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatg------aatcaattttttcccaaa-ttacgaatggattgaaggaagt |
8203974 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8203973 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
8203935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 38083059 - 38082941
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttt-tcccaaaattacgaatggattgaaggaag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||| |
|
|
| T |
38083059 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttgttcccaaattatgaatggattgaaggaag |
38082960 |
T |
|
| Q |
104 |
taatggttgggttgaaaaa |
122 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38082959 |
aaatggttgggttgaaaaa |
38082941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 513 - 566
Target Start/End: Complemental strand, 42992489 - 42992436
Alignment:
| Q |
513 |
aatactgaaatctatttttgtgttcggcaattcggtttacgataaactaaaatt |
566 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42992489 |
aataatgaaatttatttttgtgttcggcaattcggtttacgataaactaaaatt |
42992436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 8204017 - 8203956
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8204017 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttgggttgaaaaa |
8203956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 22974313 - 22974374
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22974313 |
gatgaatcaattttttt--ccaaattacgaatggattgaaggaagaaatagttgggttgaaaaa |
22974374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 38083887 - 38083948
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| || |||| |||||||||| |
|
|
| T |
38083887 |
gatgaatcaattttttt--ccaaattacgaatggattgaaggaagtaacggttaggttgaaaaa |
38083948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Complemental strand, 13432898 - 13432411
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13432898 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttaccaaa-ttacgaatggattgaaggaagt |
13432800 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13432799 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaattagttgaatgagagagtttcgtcggatagatgaatcaatttttgttcccaaattatgaat |
13432700 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaa |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
13432699 |
ggattgaaggaagaaatggttggattgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattgaagaagaaaacagttatgcagaagaa |
13432600 |
T |
|
| Q |
305 |
gaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgt |
404 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
13432599 |
gaaaataatttggaatttttttttta--aaaattaattaatgggtcaatctgctaataacaaaagtatactgggtcaatatatcaaactcatctcctcgt |
13432502 |
T |
|
| Q |
405 |
ccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13432501 |
ccattttttattgtgaattactgttgtccatgttatagtgatgccacgttaagatgagcagtttacccacctctttcccaagacaatttag |
13432411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 13434527 - 13434661
Alignment:
| Q |
8 |
agagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagtaat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13434527 |
agagaataaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacgaatggattgaaggaagtaat |
13434625 |
T |
|
| Q |
108 |
ggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434626 |
ggttgggttgaaaaattgaaagatgaaaacgcagaa |
13434661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 13434579 - 13434640
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13434579 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttgggttgaaaaa |
13434640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Original strand, 46044282 - 46044769
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
46044282 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttttccaaa-ttacaaatggattgaaggaagt |
46044380 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46044381 |
aatgattgggttgaaaaattgaaagatgaaaatgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
46044480 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
46044481 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaagaaagcagttatgcagaataa |
46044580 |
T |
|
| Q |
305 |
gaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgt |
404 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
46044581 |
gaaaataatctgga--tttttttttttgaaaattaattaatgggtcaatctgctaataacaaaagtataccgggtcaatatatcaaactcatctcctcgt |
46044678 |
T |
|
| Q |
405 |
ccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| | |||||| |||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
46044679 |
ccattttttattgtggattattgttgtccatattatagtgctgccacgtcaagatgggcagtttacccacctctttcccaaggcaagttag |
46044769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 495
Target Start/End: Original strand, 29532601 - 29533092
Alignment:
| Q |
4 |
cgagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaag |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |
|
|
| T |
29532601 |
cgagagagaagaaacggtatgggtggagagtaaatacgatggatgaatttgatgttgatgaatcattttttttcccaaattacgaatggattgaaggaag |
29532700 |
T |
|
| Q |
104 |
taatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532701 |
taatggttgggttgaaaaattgaaagatgaaaacacaaattaagttgaatgagagagtttcgtcggatagatgaatcaatttttgttcccaaattatgaa |
29532800 |
T |
|
| Q |
204 |
tggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgc--agaa |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
29532801 |
tggattgaaggaagaaatggttggattgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaagaaaacagttatgcagagaa |
29532900 |
T |
|
| Q |
302 |
gaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcct |
401 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29532901 |
gaagaaaataatctggaaatttcttttta--aaaattaattaatgggtcaatctgctaataacaaaagtataccgggtcaatatatcaaacccatctcct |
29532998 |
T |
|
| Q |
402 |
cgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
29532999 |
cgtccattttatattgtggattactgttgtccatgttatagtgatgtcacgtcaagataggcagtttacccacctctttcccaaggtaatttag |
29533092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 185 - 495
Target Start/End: Original strand, 11560193 - 11560501
Alignment:
| Q |
185 |
tttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaag |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
11560193 |
tttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaag |
11560292 |
T |
|
| Q |
285 |
aaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaata |
384 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
11560293 |
aaagcagttatgcagaagaagaaaattatctagaatttttttttt--gaaaattaattaatgggtcaatctgctaataacaaaagtatacctggtcaata |
11560390 |
T |
|
| Q |
385 |
tatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttccca |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11560391 |
tatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgatgccacgtcaagatgggcagtttacccacctctttccca |
11560490 |
T |
|
| Q |
485 |
agacaatttag |
495 |
Q |
| |
|
|| ||||||| |
|
|
| T |
11560491 |
aggtaatttag |
11560501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 11537153 - 11537016
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11537153 |
gagagagaagaaacggtatgagtggagagtaaatacgatagatgaatttgatgttgatgaatcaattttttccc-aaattacgaatggattgaaggaagt |
11537055 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11537054 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
11537016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 46042876 - 46042739
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
46042876 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacgaatagattgaaggaagt |
46042778 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46042777 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
46042739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 11537098 - 11537037
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11537098 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttgggttgaaaaa |
11537037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 46042821 - 46042760
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| |||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
46042821 |
gatgaatcaattttt--tcccaaattacgaatagattgaaggaagtaatggttaggttgaaaaa |
46042760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 11560202 - 11560244
Alignment:
| Q |
80 |
aaattacgaatggattgaaggaagtaatggttgggttgaaaaa |
122 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11560202 |
aaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
11560244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 5 - 495
Target Start/End: Original strand, 19879923 - 19880416
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19879923 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaa-ttacgaatggattgaaggaagc |
19880021 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19880022 |
aatggttgggttgaaaaattgaaagatgaaaacgtagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
19880121 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagc------agttatgca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
19880122 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaaggtagaagaagaaagcaattatttgatattggagaagaaagcagttatagttatgca |
19880221 |
T |
|
| Q |
299 |
gaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatct |
398 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
19880222 |
gaagaagaaaataatctggaa--ttttttttttgaaatttaattaatgggtcaatctgctaataacaaaagtatactgggtcaatatatcaaacccatct |
19880319 |
T |
|
| Q |
399 |
cctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||| ||| ||||||||||||| |||||||| ||| |||| |
|
|
| T |
19880320 |
cctcgtccattttttattgtagattgctgttgtccatgttatagtgatgccacgtcaagattggcggtttacccacctcattcccaaggcaagttag |
19880416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 19878216 - 19878079
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19878216 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacgaatggattgaaggaagt |
19878118 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19878117 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
19878079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 19878161 - 19878100
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
19878161 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttaggttgaaaaa |
19878100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 414
Target Start/End: Original strand, 32257569 - 32257974
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
32257569 |
gagagagaagaaacagtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttccc--aaattacgaatggattgaaggaagt |
32257666 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32257667 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaataagttgaatgagagagttttgtcggatagatgaatcaatttttgttcccaaattatgaat |
32257766 |
T |
|
| Q |
205 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
32257767 |
ggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaagaaagcagttatgtagaagaa |
32257866 |
T |
|
| Q |
305 |
gaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgt |
404 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
32257867 |
gaaaataatctggaatttttttttttt--aaattaattaatgggtcaatctgctaataacaaaagtttaccgggtcaatatatcaaacccatctcctcgt |
32257964 |
T |
|
| Q |
405 |
ccatttttta |
414 |
Q |
| |
|
|||||||||| |
|
|
| T |
32257965 |
ccatttttta |
32257974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 173 - 495
Target Start/End: Original strand, 40907698 - 40908018
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
40907698 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaataaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttg |
40907797 |
T |
|
| Q |
273 |
atattggagaagaaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
40907798 |
atattggagaagaaagcagttatgcagaagaagaaaataatctgaaaattttttttt--gaaaattaattaatggattaatctgctaataacaaaagtat |
40907895 |
T |
|
| Q |
373 |
accggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttaccc |
472 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
40907896 |
accgggtcaatatatcaaacccatctcctcgtccattttttattgtggattactgctgtccatgttatagtgatgccacgtcaagatgggcagtttaccc |
40907995 |
T |
|
| Q |
473 |
acctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
40907996 |
acctctttcccaaggcaatttag |
40908018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 40906846 - 40906709
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40906846 |
gagagagaagaaacagtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacgaatggattgaaggaagt |
40906748 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40906747 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
40906709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 32256696 - 32256559
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
32256696 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcgc-aaattacgaatagattgaaggaagt |
32256598 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32256597 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
32256559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 40907643 - 40907761
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttt-tcccaaaattacgaatggattgaaggaag |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||| |
|
|
| T |
40907643 |
gagagagaagaaatggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttgttcccaaattatgaatggattgaaggaat |
40907742 |
T |
|
| Q |
104 |
taatggttgggttgaaaaa |
122 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40907743 |
aaatggttgggttgaaaaa |
40907761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 40906791 - 40906730
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
40906791 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttaggttgaaaaa |
40906730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 32256641 - 32256580
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| || ||||||| |||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
32256641 |
gatgaatcaattttt--tcgcaaattacgaatagattgaaggaagtaatggttaggttgaaaaa |
32256580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 173 - 495
Target Start/End: Complemental strand, 65396 - 65076
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttc |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
65396 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaataaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttg |
65297 |
T |
|
| Q |
273 |
atattggagaagaaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
65296 |
atattggagaagaaagcagttatgcagaagaagaaaataatctgaaaattttttttt--gaaaattaattaatggattaatctgctaataacaaaagtat |
65199 |
T |
|
| Q |
373 |
accggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttaccc |
472 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
65198 |
accgggtcaatatatcaaacccatctcctcgtccattttttattgtggattactgctgtccatgttatagtgatgccacgtcaagatgggcagtttaccc |
65099 |
T |
|
| Q |
473 |
acctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
65098 |
acctctttcccaaggcaatttag |
65076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 43172 - 43309
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43172 |
gagagagaagaaacagtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacgaatggattgaaggaagt |
43270 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43271 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
43309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 65451 - 65333
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttt-tcccaaaattacgaatggattgaaggaag |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||| |
|
|
| T |
65451 |
gagagagaagaaatggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttgttcccaaattatgaatggattgaaggaat |
65352 |
T |
|
| Q |
104 |
taatggttgggttgaaaaa |
122 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
65351 |
aaatggttgggttgaaaaa |
65333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 43227 - 43288
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
43227 |
gatgaatcaattttt--tcccaaattacgaatggattgaaggaagtaatggttaggttgaaaaa |
43288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0645 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0645
Description:
Target: scaffold0645; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 185 - 495
Target Start/End: Complemental strand, 2502 - 2194
Alignment:
| Q |
185 |
tttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagcaattatttcatattggagaag |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||| |
|
|
| T |
2502 |
tttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacgtagaagaagaaagcagttatttgatattggagaag |
2403 |
T |
|
| Q |
285 |
aaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaattaattaatgggtcaatctgctaataacaaaagtataccggatcaata |
384 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
2402 |
aaagcagttatgcagaagaagaaaattatctagaatttttttttt--gaaaattaattaatgggtcaatctgctaataacaaaagtatacctggtcaata |
2305 |
T |
|
| Q |
385 |
tatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgataccacgttaagatgggcagtttacccacctctttccca |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2304 |
tatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgatgccacgtcaagatgggcagtttacccacctctttccca |
2205 |
T |
|
| Q |
485 |
agacaatttag |
495 |
Q |
| |
|
|| ||||||| |
|
|
| T |
2204 |
aggtaatttag |
2194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0645; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 2493 - 2451
Alignment:
| Q |
80 |
aaattacgaatggattgaaggaagtaatggttgggttgaaaaa |
122 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2493 |
aaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
2451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 251 - 485
Target Start/End: Complemental strand, 42809192 - 42808957
Alignment:
| Q |
251 |
agaagaagaaagcaattatttcatattggagaagaaagcagttatgcagaagaagaaaataatctggaannnnnnnnnnnngaaaa-ttaattaatgggt |
349 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
42809192 |
agaagaagaaagcggttatttgatattggagaagaaagcagttatgcagaagaagaaaataatctggaattttttatttttttttagttaattaatgggt |
42809093 |
T |
|
| Q |
350 |
caatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatgttatagtgatacc |
449 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
42809092 |
caatctgctaataacaaaagtataccaggtcaatatatcaaatccatctcctagtccattttttattgtggattacagttgtccatgttatagtgatgcc |
42808993 |
T |
|
| Q |
450 |
acgttaagatgggcagtttacccacctctttcccaa |
485 |
Q |
| |
|
|| | |||||||| | |||||||||||||||||||| |
|
|
| T |
42808992 |
acctcaagatgggtaatttacccacctctttcccaa |
42808957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 15524 - 15661
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
15524 |
gagagagaagaaacggtatgactggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttccc-aaattacaaatggattgaaggaagt |
15622 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15623 |
aatggttaggttgaaaaattgaaagatgaaaacgcagaa |
15661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 15579 - 15640
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
15579 |
gatgaatcaattttt--tcccaaattacaaatggattgaaggaagtaatggttaggttgaaaaa |
15640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 5 - 143
Target Start/End: Complemental strand, 278448 - 278311
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
278448 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttttcc-aaattacgaatggattgaaggaagt |
278350 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
278349 |
aatagttaggttgaaaaattgaaagatgaaaacgcagaa |
278311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 278393 - 278332
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaa |
236 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
278393 |
gatgaatcaattttttt--ccaaattacgaatggattgaaggaagtaatagttaggttgaaaaa |
278332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 9e-56; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 17751963 - 17751805
Alignment:
| Q |
337 |
ttaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||| |||||||||| |
|
|
| T |
17751963 |
ttaattaatgggtcaatctgctaataacaaaagtataccgggtcaatatatcaaacccatctcctaatccattttttggtgtagattacagttgtccatg |
17751864 |
T |
|
| Q |
437 |
ttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
17751863 |
ttatagtgatgccacgtcaagatgggtagtttacccacctctttcccaaggcaagttag |
17751805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 1533933 - 1533809
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
1533933 |
gagagagaacaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttt-cctaaattacgaatggattgaaggaagt |
1533835 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaaga |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1533834 |
aatggttgggttgaaaaattgaaaga |
1533809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 17752143 - 17752019
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
17752143 |
gagagagaacaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaatttttt-cctaaattacgaatggattgaaggaagt |
17752045 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaaga |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
17752044 |
aatggttgggttgaaaaattgaaaga |
17752019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 1541873 - 1542010
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||| |
|
|
| T |
1541873 |
gagagagaagaaacggtatgagtggagagtaaataggatggatgaatttgatgttgatgaatcaattttttccc-aatttacaaatggattgaagaaagt |
1541971 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
1541972 |
aatgattaggttgaaaaattgaaagatgaaaacacagaa |
1542010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 17771921 - 17772058
Alignment:
| Q |
5 |
gagagagaagaaacggtatgagtggagagtaaatacgatggatgaatttgatgttgatgaatcaattttttcccaaaattacgaatggattgaaggaagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |||| |
|
|
| T |
17771921 |
gagagagaagaaacggtatgagtggagagtaaataggatggatgaatttgatgttgatgaatcaatttttttcc-aaattacaaatggattgaagaaagt |
17772019 |
T |
|
| Q |
105 |
aatggttgggttgaaaaattgaaagatgaaaacgcagaa |
143 |
Q |
| |
|
|||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
17772020 |
aatgattaggttgaaaaattgaaagatgaaaacacagaa |
17772058 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 337 - 495
Target Start/End: Complemental strand, 1533752 - 1533595
Alignment:
| Q |
337 |
ttaattaatgggtcaatctgctaataacaaaagtataccggatcaatatatcaaacccatctcctcgtccattttttattgtggattactgttgtccatg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| ||| |||||| |||||||||| |
|
|
| T |
1533752 |
ttaattaatgggtcaatctgctaataacaaaagtataccgggtcaatatatcaaatccatctcctaatccattttttggtgtagattacagttgtccatg |
1533653 |
T |
|
| Q |
437 |
ttatagtgataccacgttaagatgggcagtttacccacctctttcccaagacaatttag |
495 |
Q |
| |
|
|||| ||||| |||||| |||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
1533652 |
ttat-gtgatgccacgtcaagatgggtagtttacccacctctttcccaaggcaagttag |
1533595 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 17752088 - 17751999
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagca |
264 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
17752088 |
gatgaatcaattttt--tcctaaattacgaatggattgaaggaagtaatggttgggttgaaaaattgaaagaaaaggtagaagaagaaagca |
17751999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 1533878 - 1533790
Alignment:
| Q |
173 |
gatgaatcaatttttgttcccaaattatgaatggattgaaggaagaaatggttgggttgaaaaactaaaagaaaacatagaagaagaaagc |
263 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
1533878 |
gatgaatcaattttt--tcctaaattacgaatggattgaaggaagtaatggttgggttgaaaaattgaaagaaaaggtagaagaagaaagc |
1533790 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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