View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_10 (Length: 520)
Name: NF18328_low_10
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_10 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 265 - 520
Target Start/End: Original strand, 443394 - 443651
Alignment:
| Q |
265 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
364 |
Q |
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| T |
443394 |
ggactaatgttatgggtccttacatatttagggaccaaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttacc |
443493 |
T |
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| Q |
365 |
ag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
462 |
Q |
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| T |
443494 |
agaggaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatc |
443593 |
T |
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| Q |
463 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaag |
520 |
Q |
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| T |
443594 |
ttaccttaggtagtttaagcctaattatgattatgtatttttatttcttaggatcaag |
443651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 443164 - 443400
Alignment:
| Q |
1 |
gttgttgttcagattgtgtttgagttttctcaattgcattagagagtaacttgtgtgtatgtcgtgctaa-tacccaatttaaggaaactataattttgg |
99 |
Q |
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| T |
443164 |
gttgttgttcagattgtgtttgagttttctcaattgcattagagagtaacttgtgtgtatgtcgtgctaagtacccaatttaaggaaactataattttgg |
443263 |
T |
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| Q |
100 |
tttctgagtttttaagcactagtcatatactcatatcatatataacaatccctaaatttattattcattagtgattagtcaattggtctctagattcaga |
199 |
Q |
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| T |
443264 |
tttctgagtttttaagcactagtcatatactcatatcatatataacaatccctaaatttatcattcattagtgattagtcaattggtctctagattcaga |
443363 |
T |
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| Q |
200 |
cactaatatgattgatgcttgcagattcagggactaa |
236 |
Q |
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| T |
443364 |
cactaatatgattgatgcttgcagattcagggactaa |
443400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
326 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
411 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 326 - 408
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
326 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
408 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 29571779 - 29571722
Alignment:
| Q |
5 |
ttgttcagattgtgtttgagttttctca---attgcattagagagtaacttgtgtgta |
59 |
Q |
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| T |
29571779 |
ttgttcagattgtgtttgagtttgctcaattattgcattagaaagtaacttgtgtgta |
29571722 |
T |
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