View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_11 (Length: 497)
Name: NF18328_low_11
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 11 - 478
Target Start/End: Complemental strand, 38363125 - 38362662
Alignment:
| Q |
11 |
caaaggagtaaggatccattggcttaaatgaaagactgtattattaattatggagcctaaaatgtagttaatgtttgcatttaaataacacattctaatg |
110 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38363125 |
caaaggagtaaggatccattagtttaaatgaaagactgaattattaattatagagcctaaaatgtagttaatgtttgcatttaaataacacattataatg |
38363026 |
T |
|
| Q |
111 |
attttcctgcaatttttacaattattattctcatatttcacgttttcctaataaatatgacaatgaggaagaaaaggggataatatcatgtgattcccta |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38363025 |
attttcttgcaatttttacaattattattctcatatttcacgtgttcctaataaatatgacaatgaggaagaaaaggggataatatcatgtgattaccta |
38362926 |
T |
|
| Q |
211 |
gcttagctacagtactattgcctgcaaagtttaattaaggaaccatataattgagccgttgacaaaatttaataaggtaatcatattataaacgtaatgc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38362925 |
gcttagctacagtactattgcctgcaaagtttaattaaggaaccatataattgagccgttgacaaaatttaataaggtaatcatattataaacgtaatgc |
38362826 |
T |
|
| Q |
311 |
tgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttccctacctacgtgtaaggtactctatatcaatcaattggta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38362825 |
tgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttcc----ctacgtgtaaggtactctaaatcaatcaattggta |
38362730 |
T |
|
| Q |
411 |
tgtgaggcaccaataaatgcaaatgagtctgactgttaccaaaattggactactgaccatatcacaca |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38362729 |
tgtgaggcaccaataaatgcaaatgagtctgactgttaccaaaattggactactgaccatatcacaca |
38362662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 38369247 - 38369202
Alignment:
| Q |
195 |
atcatgtgattccctagcttagctacag-tactattgcctgcaaag |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
38369247 |
atcatgtgattccctagcttagctacagatagtattggctgcaaag |
38369202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University