View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_12 (Length: 476)
Name: NF18328_low_12
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 43561190 - 43560742
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561190 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtt |
43561091 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43561090 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
43560991 |
T |
|
| Q |
219 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43560990 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
43560891 |
T |
|
| Q |
319 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43560890 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
43560791 |
T |
|
| Q |
419 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgcttctc |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43560790 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgtttctc |
43560742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 17729970 - 17730417
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
17729970 |
acaattgattggaaatctcaaatgattttttgagggagcatggtggtccgacctcgaagccttcttacttgatcaagagaagtatagcaggatatttgtc |
17730069 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
218 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| |||||||||||| ||| || |||||| |||||||| || ||||||||||||||| | |
|
|
| T |
17730070 |
gagcaactcgagtatagtaaaaaactcttgacggaaatatctgaagatattcgatttaaagaacaacaggttcttgcggagcaaagaggaatactggctc |
17730169 |
T |
|
| Q |
219 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaagaattgaaaaacgagcttaccaatac |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17730170 |
aatggaatggttctgtggagggatctgaacaagtctttagagagcaccttgatcacatggccatgcataaacaagaattgaaaaacgagcttacaaatat |
17730269 |
T |
|
| Q |
319 |
cgatgccgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcatt |
418 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| |||| |
|
|
| T |
17730270 |
cgatgacgagcttatggaggttcgctcaaacttgaaggaagctctaaaggccagagccaaactggcttctttagagttcaatattttgtctcctaccatt |
17730369 |
T |
|
| Q |
419 |
attcgcgaaaaagatacaatatagggtagaactcatacctttgcttct |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
17730370 |
attcgcgaaaaagatacaatatagggtagaatttatacctttgtttct |
17730417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 43569411 - 43569243
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| || ||||| |||| |||| |||||||||||| |
|
|
| T |
43569411 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggttcgaccttgaaaccttcttactcgatcataagaagtatatcaggatatttgtc |
43569312 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaa |
187 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| ||| |||||||||| ||||| ||||||| |
|
|
| T |
43569311 |
gagcaactcgagtatagtgagaaactcgtgacggaaatattcgatgatattcgaactagagaacaacaa |
43569243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 325 - 466
Target Start/End: Complemental strand, 43570167 - 43570028
Alignment:
| Q |
325 |
cgagcttatggaggttcgctcgaacttgaaagaagctctaaaggctagagccaaactggcttctttagagttcaatattgtttctcctagcattattcgc |
424 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43570167 |
cgagcttatggaggttcgctcgaagttgaaagatgctctaaaggccagagccaaactggcttctttagagttcaatattttttctcctagcattattcgt |
43570068 |
T |
|
| Q |
425 |
gaaaaagatacaatatagggtagaactcatacctttgcttct |
466 |
Q |
| |
|
|||||||||||| ||||||||||||| || |||||| |||| |
|
|
| T |
43570067 |
gaaaaagataca--atagggtagaacttatgcctttgtttct |
43570028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 1601861 - 1601625
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| || |||||| ||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
1601861 |
acaattgattggaaatctcaaatggtgtttttagggagcatagtggtctgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc |
1601762 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
218 |
Q |
| |
|
|||||| |||||| |||||| ||| ||||||| ||||| |||| ||||||| || ||||| ||||||||||||||| || ||||||||||| ||| | |
|
|
| T |
1601761 |
gagcaaatcgagtgtagtgagaaattcttgacgtaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatattggctc |
1601662 |
T |
|
| Q |
219 |
aatggaacagttctgtggagggatctgaacaagtctt |
255 |
Q |
| |
|
||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
1601661 |
aatggaatggttctgcggaaagatctgaacaagtctt |
1601625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 1601318 - 1601591
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||| |||||||||||||| || |||||||||||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
1601318 |
acaattgaatggaaatctcaaacggtgttttgcgggagcatggtggtatgaactcgaagccttcttactctatcacgagatgtatatcaggatatttgtg |
1601417 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
218 |
Q |
| |
|
||||||||||||| |||||| |||||||| | |||||||| || |||||| || ||||| ||||||||||||||| || | |||||||||| || | |
|
|
| T |
1601418 |
gagcaactcgagtgtagtgagaaactcttaatggaaatatctgatgatatttaaactagagaacaacaagttcttgcggagcatagaggaatacgggctc |
1601517 |
T |
|
| Q |
219 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatgcataaacaa |
292 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||| ||| || |||||| ||||||||||| | |||||| |
|
|
| T |
1601518 |
gatgaaatggttctacggagggatctgaacaagtcttgagatagcaccttgaatacttggccatgtagaaacaa |
1601591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 1621796 - 1622060
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| || |||||| |||||| || |||| ||||| |||| |||||||||||| |
|
|
| T |
1621796 |
acaattgattggaaatctcagatggtgttttgcgggagcatggtggtatgaaatcgaagtcttcttactcgatcgcgagatgtatatcaggatatttgtc |
1621895 |
T |
|
| Q |
119 |
gagcaactcgagtatagtgaaaaactcttgacagaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttg |
218 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||| || |||||| || ||||| |||||| |||||||| || | ||||||||| ||| | |
|
|
| T |
1621896 |
gagcaactcgagtgtagtgagaaactcttgacggaaatatctgatgatatttaaactagagaacaacaggttcttgcggagcatagaggaatattggctc |
1621995 |
T |
|
| Q |
219 |
aatggaacagttctgtggagggatctgaacaagtctttagagagagccttgagcacttggccatg |
283 |
Q |
| |
|
|||| || ||||| ||| |||||||||||||| || ||| | |||||| |||||||||||| |
|
|
| T |
1621996 |
aatgaaatggttctacggatggatctgaacaagtattgagataacaccttgaacacttggccatg |
1622060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 1622315 - 1622213
Alignment:
| Q |
19 |
acaattgattggaaatctcaaatggttttttgagggagcatggtggtccgacctcgaagccttcttgcttgatcacgagaaatatagtaggatatttgtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||| || |||||| ||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
1622315 |
acaattgattggaaatctcaaatggtgattttagggagcatagtggtatgaactcgaacccttcttactcgatcacgagaagtatagcaggatatttgtc |
1622216 |
T |
|
| Q |
119 |
gag |
121 |
Q |
| |
|
||| |
|
|
| T |
1622215 |
gag |
1622213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 1622206 - 1622103
Alignment:
| Q |
152 |
gaaatatccgaagatattcgaattagagtacaacaagttcttgcacaggaaagaggaatactggttgaatggaacagttctgtggagggatctgaacaag |
251 |
Q |
| |
|
|||||| |||| ||||||| || ||||| ||||||||||||||| || ||||||||||||||| | ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
1622206 |
gaaataaccgatgatattcaaactagagaacaacaagttcttgcggagcaaagaggaatactggctcaatggaatggttctgcggaaggatctgaacaag |
1622107 |
T |
|
| Q |
252 |
tctt |
255 |
Q |
| |
|
|||| |
|
|
| T |
1622106 |
tctt |
1622103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 6414402 - 6414366
Alignment:
| Q |
24 |
tgattggaaatctcaaatggttttttgagggagcatg |
60 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6414402 |
tgattggaaatctcaaatggtattttgagggagcatg |
6414366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University