View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_15 (Length: 414)
Name: NF18328_low_15
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 29252037 - 29252369
Alignment:
| Q |
1 |
actcattcttgtttacaaataataattgtctctctgtttattttctttcataagaaatcagtttacttttgctactggtcaatatttgaaccataaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29252037 |
actcattcttgtttacaaataataattgtctctctgtttattttctttcataagaaatcagtttacttttgctactggtcaatatatgaaccataaactt |
29252136 |
T |
|
| Q |
101 |
caaactacacatatttcttctctccatattactcttcacattacgactgtgtgtggcttgattttaagtgcatgattccctagaatttaattaattaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29252137 |
caaactacacatatttcttctctccatattactcttcacattacgactgtgtgtggcttgattttaagtgcatgattcactagaatttaattaattaggt |
29252236 |
T |
|
| Q |
201 |
ggtgccttttgtatgaatctttcggtttttatatgttccccttttttatgcaggtttgttttgtaatactgttttcaaattagggcatctcttgcgtttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29252237 |
ggtgccttttgtatgaatctttcggtttttatatgttccccttttttatgcaggtttgttttgtaatactgttttcaaattagggcatctcttgcgtttg |
29252336 |
T |
|
| Q |
301 |
agtttgacttttagcaataaacttttgggcatt |
333 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
29252337 |
agtttgacttttagcaataaacttttgtgcatt |
29252369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34550293 - 34550242
Alignment:
| Q |
1 |
actcattcttgtttacaaataataattgtctctctgtttattttctttcataa |
53 |
Q |
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||||||||||||||| |||| ||||||||| || ||||||||||||||||||| |
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| T |
34550293 |
actcattcttgttta-aaatcataattgtccctatgtttattttctttcataa |
34550242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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