View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18328_low_16 (Length: 411)

Name: NF18328_low_16
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18328_low_16
NF18328_low_16
[»] chr3 (5 HSPs)
chr3 (23-404)||(19766461-19766823)
chr3 (140-404)||(17682304-17682572)
chr3 (20-109)||(17682216-17682305)
chr3 (20-50)||(19881742-19881772)
chr3 (21-50)||(31685524-31685553)
[»] chr6 (6 HSPs)
chr6 (224-371)||(15434073-15434219)
chr6 (132-213)||(15434298-15434379)
chr6 (216-285)||(10093072-10093141)
chr6 (216-285)||(33044884-33044953)
chr6 (73-156)||(33044986-33045069)
chr6 (73-117)||(10092970-10093014)
[»] chr4 (5 HSPs)
chr4 (216-385)||(22292033-22292201)
chr4 (140-213)||(22292289-22292362)
chr4 (73-152)||(29862905-29862984)
chr4 (230-285)||(29862802-29862857)
chr4 (185-217)||(7135469-7135501)
[»] scaffold0045 (2 HSPs)
scaffold0045 (216-285)||(11072-11141)
scaffold0045 (79-148)||(11182-11251)
[»] chr8 (7 HSPs)
chr8 (216-285)||(5658370-5658439)
chr8 (68-154)||(14677564-14677650)
chr8 (216-285)||(14677460-14677529)
chr8 (216-285)||(31100310-31100379)
chr8 (73-156)||(5658254-5658337)
chr8 (73-156)||(31100412-31100495)
chr8 (20-50)||(14677653-14677683)
[»] scaffold0035 (2 HSPs)
scaffold0035 (217-285)||(35676-35744)
scaffold0035 (73-156)||(35559-35642)
[»] chr2 (2 HSPs)
chr2 (20-61)||(32277458-32277499)
chr2 (20-50)||(23348611-23348641)
[»] chr7 (3 HSPs)
chr7 (20-50)||(1262549-1262579)
chr7 (20-50)||(43071013-43071043)
chr7 (20-50)||(48849413-48849443)
[»] chr5 (1 HSPs)
chr5 (20-50)||(7473120-7473150)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 404
Target Start/End: Original strand, 19766461 - 19766823
Alignment:
Q  23 gattccgacatcaccttcgccgttgtcgacttccccgccaccgtatgcatcatcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  19766461 gattccgacatcaccttcgccgttgtcgacttccccgccaccgtatgcatcatcgtatcagctagacaagcaaaaagaaccgcacaatttttccaacaaa 19766560  T
Q  123 aacatgccactccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcag 222  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||     
T  19766561 aacatgccaccccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctctcaa 19766660  T
Q  223 ggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaat--cactatccacctctcagttgtttcttcaattccattcattattgttaat 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||               
T  19766661 ggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcacactctccacctctcagttgtttcttcaattccattca----------- 19766749  T
Q  321 aaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 404  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766750 ----------ttaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 19766823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 140 - 404
Target Start/End: Original strand, 17682304 - 17682572
Alignment:
Q  140 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccct 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17682304 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccct 17682403  T
Q  240 ttctatgaaatgaattgtgttttgagtttaatcactatccacctctca----gttgtttcttcaattccattcattattgttaataaatttgcaattagg 335  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17682404 ttctatgaattgaattgtgttttgagattaatcactctccacctctcaatatattgtttcttcaattccattcattattggtaataaatttgcaattagg 17682503  T
Q  336 ttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 404  Q
    ||||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17682504 ttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctca 17682572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 17682216 - 17682305
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcgacttccccgccaccgtatgcatcatcgtatcagacagacaagcaaaaagaaccgcacaa 109  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  17682216 ctcgattccgacatcacctttgccgttgtcgactttcccaccaccgtctgcggcatcgtatcagccagacaagcaaaaagaaccgcacaa 17682305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 19881772 - 19881742
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  19881772 ctcgattccgacatcaccttcgccgttgtcg 19881742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 31685524 - 31685553
Alignment:
Q  21 tcgattccgacatcaccttcgccgttgtcg 50  Q
    ||||||||||||||||||||||||||||||    
T  31685524 tcgattccgacatcaccttcgccgttgtcg 31685553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 224 - 371
Target Start/End: Complemental strand, 15434219 - 15434073
Alignment:
Q  224 gtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattgttaataaa 323  Q
    ||||||||||||||||||||| | | ||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| | ||  ||||    
T  15434219 gtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaat-tttgtaaa 15434121  T
Q  324 tttgcaattaggttcacaacataatcagatttaggtctctgacgagaa 371  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  15434120 tttgcaattagattcacaacagaatcagatttgggtctctgatgagaa 15434073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 15434379 - 15434298
Alignment:
Q  132 ctccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 213  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434379 ctccgaaaaaagagaaataagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 10093141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct 33044884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 33045069 - 33044986
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 156  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  33045069 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccagataaagagaaagaagccat 33044986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 10092970 - 10093014
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttcca 117  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||    
T  10092970 catcgtatcagccaggcaaacaaaaagaacagcacaatttttcca 10093014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 385
Target Start/End: Complemental strand, 22292201 - 22292033
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattg 315  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |     
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaat- 22292103  T
Q  316 ttaataaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttg 385  Q
    ||  ||||||||||||||| ||||||||| ||||| |||| || |||||| ||||| | ||| |||||||    
T  22292102 tttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttg 22292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 22292362 - 22292289
Alignment:
Q  140 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 213  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292362 aaagagaaataagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 29862984 - 29862905
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaag 152  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||    
T  29862984 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaag 29862905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
Q  230 gcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  29862857 gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct 29862802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  185 ccgtcgttgctctctcccttcatcaacaatgct 217  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 11072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 11251 - 11182
Alignment:
Q  79 atcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaa 148  Q
    ||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||    
T  11251 atcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacttgccactccagataaagagaaa 11182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 5658439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 14677650 - 14677564
Alignment:
Q  68 tgcatcatcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagcc 154  Q
    |||| ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||    
T  14677650 tgcagcatcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaagcc 14677564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct 14677460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
Q  216 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    |||||| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct 31100310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 5658254 - 5658337
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 156  Q
    ||||||||||  ||||||| ||||||||||  ||||| ||||||| | ||||| |||||||||  |||||||||||||||||||    
T  5658254 catcgtatcatccagacaaacaaaaagaacaacacaacttttccacctaaaacctgccactccagataaagagaaagaagccat 5658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 31100495 - 31100412
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 156  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||  |||||||||  |||||||||||||||||||    
T  31100495 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaatctgccactccagataaagagaaagaagccat 31100412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 14677683 - 14677653
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  14677683 ctcgattccgacatcaccttcgccgttgtcg 14677653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 35676 - 35744
Alignment:
Q  217 tctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 285  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct 35744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 35559 - 35642
Alignment:
Q  73 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 156  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  35559 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaagccat 35642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 32277458 - 32277499
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcgacttccccgcc 61  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  32277458 ctcgattccgacatcatcctcgccgttgtcgacttccccgcc 32277499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 23348641 - 23348611
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  23348641 ctcgattccgacatcaccttcgccgttgtcg 23348611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 1262549 - 1262579
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  1262549 ctcgattccgacatcaccttcgccgttgtcg 1262579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 43071043 - 43071013
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  43071043 ctcgattccgacatcaccttcgccgttgtcg 43071013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 48849443 - 48849413
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  48849443 ctcgattccgacatcaccttcgccgttgtcg 48849413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Complemental strand, 7473150 - 7473120
Alignment:
Q  20 ctcgattccgacatcaccttcgccgttgtcg 50  Q
    |||||||||||||||||||||||||||||||    
T  7473150 ctcgattccgacatcaccttcgccgttgtcg 7473120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University