View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_19 (Length: 370)
Name: NF18328_low_19
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 5195091 - 5194817
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaa-tagagttaattagacgctccacaaaataattatatttta |
99 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||||||||||||||||||| |||| | || |||||||| || |||||||||||||||||||||||| |
|
|
| T |
5195091 |
catccccctttctttccattagcgtctcatataagaactgcagattcagatgattaacaaatagagtta----gaagctccacaaaataattatatttta |
5194996 |
T |
|
| Q |
100 |
tatattaataaaaagtaaaatcttttaagcataaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggac |
199 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5194995 |
tatattgataaaaagtaagatcttttaagcataaatgcatgtgtctgacataaaatggaaacatgacaatacaatttttactttttctattatataggac |
5194896 |
T |
|
| Q |
200 |
aatcgccaattgttggaagcatggtctaa-actatatgaacatgggagacaatgacatacggtacctcgatgaatgctc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5194895 |
aatcgccaattgttggaagcatggtctaatactatatgaacatgggagacaatgacatacggtacctcaatgaatgctc |
5194817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 5198995 - 5199270
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaa-tagagttaattagacgctccacaaaataattatatttta |
99 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||||||| ||| ||| ||| | || |||||||| || ||||||||||| |||||| ||||| |
|
|
| T |
5198995 |
catccccctttctttccattagcgtctcatataaaaactgcatatttagattattaacaaatagagtta----gaagctccacaaaacaattatgtttta |
5199090 |
T |
|
| Q |
100 |
tatattaataaaaagtaaaatcttttaagcataaatgcatgcgtctg-acataaaacggaaacatggcaatacaatttttactatttctattaaatagga |
198 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||| ||||||||||||| || |
|
|
| T |
5199091 |
tatattgataaaaagtaatatcttttaagcataaatgcatgtgtctgcacataaaacagaaacatggcaatacatgttttaccttttctattaaataaga |
5199190 |
T |
|
| Q |
199 |
caatcgccaattgttggaagcatggtctaa-actatatgaacatgggagacaatgacatacggtacctcgatgaatgctc |
277 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
5199191 |
caatcggaaattgttggaagcatggtctaatactatatgaacatgggagacaatgacatatggtaccacaatgaatgctc |
5199270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5177655 - 5177399
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaa-tagagttaattagacgctccacaaaataattatatttta |
99 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||||||||||||||| |||| | || |||||||| || ||||||||||| ||| |||||||| |
|
|
| T |
5177655 |
catccccctttctttccattagcgtctcatataaaaactgcagattcagatgattaacaaatagagtta----gaagctccacaaaacaatcatatttta |
5177560 |
T |
|
| Q |
100 |
tatattaataaaaagtaaaatcttttaagcataaatgcatgcgtctgacataaaacggaaa---catggcaatacaatttttactatttctattaaatag |
196 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||| |||| ||||||||||||| || |||| ||||||||| |
|
|
| T |
5177559 |
tatattgatcaaaagtaaaatcttttaaacataaatgcatg-ttctgacataaaacggaaacatcatgacaatacaattttt-ctttttcgattaaatag |
5177462 |
T |
|
| Q |
197 |
gacaatcgccaattgttggaagcatggtctaa-actatatgaacatgggagacaatgacatac |
258 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
5177461 |
gacaatcaccaattgtaggaagcatggtctaatactatatgaacataggagacaatgacatac |
5177399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 5184857 - 5184714
Alignment:
| Q |
109 |
aaaaagtaaaatcttttaagcataaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||| ||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
5184857 |
aaaaagtaaaatcttttaagcataaatgcacatgtctgacataaaatgataacatggtaatgcaatttttacttttttgattaaataggacaatcaccaa |
5184758 |
T |
|
| Q |
209 |
ttgttggaagcatggtctaaactatatgaacatgggagacaatgacatac |
258 |
Q |
| |
|
|||| |||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
5184757 |
ttgtaggaagcatggtc------acatgaacatgcgagacaatgacatac |
5184714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 5207017 - 5206823
Alignment:
| Q |
70 |
ttagacgctccacaaaataattatattttatatattaataaaaagtaaa-atcttttaagcataaatgcatgcgtctgacataaaacggaaacatggcaa |
168 |
Q |
| |
|
||||| |||||||| || ||||||||| |||||||| ||||||||| || |||||||||||||||||| ||| ||||||||||||||| ||||||||||| |
|
|
| T |
5207017 |
ttagaagctccacacaacaattatattctatatattgataaaaagtgaacatcttttaagcataaatggatgtgtctgacataaaacgaaaacatggcaa |
5206918 |
T |
|
| Q |
169 |
tacaatttttactatttctattaa-----ataggacaatcgccaattgttggaagcatggtct-aaactatatgaacatgggagacaatgacata |
257 |
Q |
| |
|
|| | ||||| || |||| || || ||||||||||| ||| ||| ||||||||| ||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
5206917 |
tatagttttttctttttcaatgaaataggataggacaatcaccatatgtaggaagcatgttctgaaattatataaatatgggagacaatgacata |
5206823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 6231607 - 6231452
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaa-tagagttaattagacgctccacaaaataat-------ta |
92 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||| ||||||| ||| ||| |||| | || |||||||| || ||||||||||| ||| || |
|
|
| T |
6231607 |
catccccttttctttccattagcttctcgtataaaaactgcatatttagatgattaacaaatagagtta----gaagctccacaaaacaatcatatttta |
6231512 |
T |
|
| Q |
93 |
tattttatatattaataaaaagtaaaatcttttaagcataaatgcatgcgtctgacataaaa |
154 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6231511 |
tattttatatattgataaaaagtaaaatcttttaagcataaatgcat--gtctgacataaaa |
6231452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5185097 - 5184988
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaatagagttaattagacgctccacaaaataattatattttat |
100 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||||||||||||||| ||| | || | || ||||||||||||||||||||||| |||||||| |
|
|
| T |
5185097 |
catccccctttctttccattagcgtctcatataaaaactgcagattcagataattaacaa-atag--aattagacgctccacaaaataat--tattttat |
5185003 |
T |
|
| Q |
101 |
atattaataaaaagt |
115 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5185002 |
atattaataaaaagt |
5184988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 5175110 - 5175052
Alignment:
| Q |
300 |
accaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
|||||||||| |||||||| || ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5175110 |
accaacaccgcaatatacacacaataatagatttggcgcatcaatgttgacctccttca |
5175052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 305 - 358
Target Start/End: Complemental strand, 5193995 - 5193942
Alignment:
| Q |
305 |
caccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5193995 |
caccgtgatatacacatgataatagatttggagcatcaatgttgacctccttca |
5193942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 5204260 - 5204201
Alignment:
| Q |
299 |
caccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
||||| |||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5204260 |
caccaccaccataaaatacacacgataatagatttggagcgtcaatgttgacctccttca |
5204201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 1797164 - 1797200
Alignment:
| Q |
322 |
gataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1797164 |
gataatagatttggagcatcaatgttgacctccttca |
1797200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 6230683 - 6230636
Alignment:
| Q |
311 |
aatatacagacgataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
6230683 |
aatatacacacgataatagatttggagcatcaatattaacctccttca |
6230636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 358
Target Start/End: Complemental strand, 5183685 - 5183638
Alignment:
| Q |
311 |
aatatacagacgataatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||| || |||||||||| |
|
|
| T |
5183685 |
aatatacacatgataatagatttggagcatcaatattaacctccttca |
5183638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 1795912 - 1795966
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgatt |
55 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| | ||||||||| ||| |||| |
|
|
| T |
1795912 |
catccccttttctttccattagcgtctcatataaaagctgcagattgagatgatt |
1795966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 31 - 286
Target Start/End: Complemental strand, 5178658 - 5178403
Alignment:
| Q |
31 |
ataagaactgcagattcagacgattgagaatagagttaattagacgctccacaaaataattatattttatatattaataaaaa---gtaaaatcttttaa |
127 |
Q |
| |
|
|||| ||||||||||| ||| |||| | |||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5178658 |
ataaaaactgcagatttagatgattaaaaatagagtta----gaagctccacaaaacaattatattttatatattaataaaaaaaagtaaaatcttttaa |
5178563 |
T |
|
| Q |
128 |
gcataaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtcta |
227 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178562 |
gcctaaatgcatgcgtctgacataaaacggaaacatgggaatacaatttttaccatttctattaaataggacaatcgccaattgttggaagcatggtcta |
5178463 |
T |
|
| Q |
228 |
a-actatatgaacatgggagacaatgacatacggtacctcgatgaatgctcctttagggt |
286 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5178462 |
atactatatgaacatgggagacaatgacatacggtacctcgatgaatgctcctttggggt |
5178403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5178789 - 5178682
Alignment:
| Q |
1 |
catccccttttctttcaattagcatctcatataagaactgcagattcagacgattgagaatagagttaattagacgctccacaaaataattatattttat |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
5178789 |
catccccctttctttcaattagcgtctcatataagaactgcagattcagacgattaagaatagag----ttagatgctccacaaaataattatattttat |
5178694 |
T |
|
| Q |
101 |
atattaataaaa |
112 |
Q |
| |
|
||||| |||||| |
|
|
| T |
5178693 |
atattgataaaa |
5178682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 5177625 - 5177547
Alignment:
| Q |
281 |
tagggtctgaactaccagcaccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcat |
359 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5177625 |
tagggtctgaactaccacaaccaacactgtaatatacaaacgataatagatttggagcatcaatgttgatctccttcat |
5177547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Complemental strand, 8306034 - 8306000
Alignment:
| Q |
325 |
aatagatttggagcatcaatgttgacctccttcat |
359 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8306034 |
aatagatttggagcatcaatgttgacctctttcat |
8306000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 8552609 - 8552643
Alignment:
| Q |
325 |
aatagatttggagcatcaatgttgacctccttcat |
359 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8552609 |
aatagatttggagcatcaatgttgacctctttcat |
8552643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Complemental strand, 49611126 - 49611093
Alignment:
| Q |
325 |
aatagatttggagcatcaatgttgacctccttca |
358 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
49611126 |
aatagatttggagcatcaatgttaacctccttca |
49611093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University