View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_22 (Length: 330)
Name: NF18328_low_22
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_22 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 52373039 - 52372723
Alignment:
| Q |
14 |
gatgaatgatgttggagaagtgagaacacacgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatggtattgaggtagccacgaa |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52373039 |
gatgaacgatgttggagaagtgagaacacatgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatggtattgaggtagccacgaa |
52372940 |
T |
|
| Q |
114 |
acaatggtactgtttggttgaagatcataagcttttcttgctgttctaacgttatgtgcagctgaacctgttgttacaagaaccggttttggtatagcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52372939 |
acaatggtactgtttggttgaagatcataagcttttcttgctgttctaacgttatgtgcagctgaacctgttgttacaagaaccggttttggtatagcag |
52372840 |
T |
|
| Q |
214 |
ttgcacctgatgtgtattgaaccaaataaacctcgtccggttttcgacctttgtatgaaaatgtataagaatttgagtttatgttattgttttttatatc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52372839 |
ttgcacctgatgtgtattgaaccaaataaacctcgtccggttttcgacctttgtatgaaaatgtataagaatttaagtttatgttattgttttttatatc |
52372740 |
T |
|
| Q |
314 |
ttctgtggaaatccatt |
330 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52372739 |
atctgtggaaatccatt |
52372723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 7702407 - 7702468
Alignment:
| Q |
33 |
gtgagaacacacgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatg |
94 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| | |||||||||| | ||||||||||| |
|
|
| T |
7702407 |
gtgagaacaaatgtggcacctgatacaattgtgagaagcagaaacatgtgtccacaatcatg |
7702468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 4304532 - 4304593
Alignment:
| Q |
33 |
gtgagaacacacgtggcacctgatacaattgtgagcaacagaaacatgagaccacaatcatg |
94 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||| || ||| ||||| ||||||||||| |
|
|
| T |
4304532 |
gtgagaacaaatgtggcacccgatacaattgtgagcagcataaaaatgagtccacaatcatg |
4304593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University