View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_24 (Length: 308)
Name: NF18328_low_24
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 5541360 - 5541066
Alignment:
| Q |
1 |
agggaattatttctttttatacaa-gattaagacatgcattgtgattatatagataaattgtagatcgcctgaatttgttggtttaaaaaatataggatg |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541360 |
agggaattatttctttttatacaaagattaagacatgcattgtgattatatagataaattgtagatcgcctgaatttgttggtttaaaaaatataggatg |
5541261 |
T |
|
| Q |
100 |
agaaaatggtgttcgattttaaggtaataaagacctaaaactcggaacattggagaatttcaattatcccctccaataacattatttagaggagttaaaa |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541260 |
agaaaatggtgttcaattttaaggtaataaagacctaaaattctgaacattggagaatttcaattatcccctccaataacattatttagaggagttaaaa |
5541161 |
T |
|
| Q |
200 |
cttgaaacttatatgaatccaagacctgcgttatttatcaatataccaaaccttgaaatttattctctcttaatttattatattgatattgattc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5541160 |
cttgaaacttatatgaatccaagacctgcgttatttatcattataccaaaccctgaaatttattctctcttaatttattatattgatattgattc |
5541066 |
T |
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