View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_26 (Length: 296)
Name: NF18328_low_26
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 54 - 283
Target Start/End: Original strand, 47285185 - 47285410
Alignment:
| Q |
54 |
caatatatttacgcaacataaacaaaagtaatgatgctnnnnnnnncagatttgtatcccaacatgtccttttagcgcatacactcactcaccacaaaga |
153 |
Q |
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| T |
47285185 |
caatatatttacgcaacataaacaaaagtaatgatgctaaaaaaaacagatttgtatcccaacatgtccttttagcacatacact----caccacaaaga |
47285280 |
T |
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| Q |
154 |
cttctgtgccaactcttgggagaaggaaaaagtcatttaccaattcaactccagcatgttcctaacattttgtggcagttgttattagtcaccatttatg |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
47285281 |
cttctgtgccaactcttgggagaaggaaaaagtcatttaccaattcaactccagcatgttcctaacattttgtggcagttcttattagtcaacatttatg |
47285380 |
T |
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| Q |
254 |
ttcacaattactatctatgcagtatatagt |
283 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
47285381 |
ttcacaattactatctatgcagtatatagt |
47285410 |
T |
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