View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_27 (Length: 293)
Name: NF18328_low_27
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 43232410 - 43232188
Alignment:
| Q |
67 |
ttataagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataa |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
43232410 |
ttataagactgcagctttaagaaggaaaaaagagaaataaaaacataacacaaacttataaataaagggtatgtatacaacaaaacaagggtgaaaataa |
43232311 |
T |
|
| Q |
167 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagagggttagataaga------------gagaagacaaatcgagt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |
|
|
| T |
43232310 |
atgaaacaaaccttacctctgaagaagttgtagtaaagaaggaaaataaagatggagggggttagataagagagagggttttagagaagacaaaacgagt |
43232211 |
T |
|
| Q |
255 |
tgaagtggattaaaaatcaagtc |
277 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
43232210 |
tgaagtggattaaaaatcaagtc |
43232188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 43233103 - 43233060
Alignment:
| Q |
2 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43233103 |
gagtaatttaacaatgagattcaagctcaagaatatgaaaaact |
43233060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 29362302 - 29362170
Alignment:
| Q |
71 |
aagactgcagctttaagaaggaaaaaggagaaataaaaacataacacaaacttataaataaacggtatgtatacaagaaaacaagggtgaaaataaatga |
170 |
Q |
| |
|
|||| |||| |||| ||||||||||| ||||| | ||| | |||||||| ||||||||||| |||||| ||| ||||||||| |||| ||||||| |
|
|
| T |
29362302 |
aagattgcaactttcagaaggaaaaaagagaagaataaagaaaacacaaagttataaataaagggtatgcata----aaaacaaggatgaagttaaatga |
29362207 |
T |
|
| Q |
171 |
aacaaaccttacctctgaagaagttgtagtaaagaag |
207 |
Q |
| |
|
|||||| || |||| ||| | |||| |||||||||| |
|
|
| T |
29362206 |
aacaaaactcacctaagaaaatgttgaagtaaagaag |
29362170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University