View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_29 (Length: 277)
Name: NF18328_low_29
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 45281993 - 45281743
Alignment:
| Q |
13 |
atcacaacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
112 |
Q |
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| T |
45281993 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45281894 |
T |
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| Q |
113 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281893 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45281794 |
T |
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| Q |
213 |
ttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatg |
263 |
Q |
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| T |
45281793 |
ttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatg |
45281743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 45273749 - 45273529
Alignment:
| Q |
13 |
atcacaacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
112 |
Q |
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| T |
45273749 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45273650 |
T |
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| Q |
113 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
212 |
Q |
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| T |
45273649 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45273550 |
T |
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| Q |
213 |
ttcaaagcttgaaaattaaac |
233 |
Q |
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||||||||||||||||||||| |
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| T |
45273549 |
ttcaaagcttgaaaattaaac |
45273529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 45293328 - 45293083
Alignment:
| Q |
18 |
aacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
45293328 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45293229 |
T |
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| Q |
118 |
aggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
217 |
Q |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
45293228 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45293129 |
T |
|
| Q |
218 |
agcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatg |
263 |
Q |
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||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
45293128 |
agcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatg |
45293083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 45302288 - 45302043
Alignment:
| Q |
18 |
aacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg |
117 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
45302288 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45302189 |
T |
|
| Q |
118 |
aggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
217 |
Q |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
45302188 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45302089 |
T |
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| Q |
218 |
agcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatg |
263 |
Q |
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||||||||||||||||||||||| || || |||||||||||||||| |
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| T |
45302088 |
agcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatg |
45302043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 45270194 - 45269967
Alignment:
| Q |
18 |
aacacatgttactatgcagagtatgccaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcagggccg |
117 |
Q |
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||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
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| Q |
118 |
aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
205 |
Q |
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|||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
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| Q |
206 |
ccttggcttcaaagcttgaaaattaaac |
233 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45269994 |
ccttggcttcaaagcttgaaaattaaac |
45269967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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