View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_32 (Length: 257)
Name: NF18328_low_32
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 31877535 - 31877754
Alignment:
| Q |
20 |
tagagaatatgtgattgtccaagttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatag |
119 |
Q |
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| T |
31877535 |
tagagaatatgtgattgtccaagttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatac |
31877634 |
T |
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| Q |
120 |
tgattaatttgcactgccaaaatccattaatgatggggaaaaataaggacaaatataattcaagaatagaatgccaattcaattatctacggagatacaa |
219 |
Q |
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| T |
31877635 |
tgattaatttgcactgccaaaatccattaatgatgggg-aaaataaggacaaatataattcaagaatagaatgccaattcaattatctacggagatacaa |
31877733 |
T |
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| Q |
220 |
ttgacataagatgaaaaatgt |
240 |
Q |
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| T |
31877734 |
ttgacataagatgaaaaatgt |
31877754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 31561186 - 31560968
Alignment:
| Q |
20 |
tagagaatatgtgattgtccaagttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatag |
119 |
Q |
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| T |
31561186 |
tagagaatatgtgattgttcaagttgtacataggttgaagatagattctcgacagtgaatatcgtcttttgttggagggctgta--------actgatat |
31561095 |
T |
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| Q |
120 |
tgattaatttgcactgccaaaatccattaatgatggggaaaaa-----taaggacaaatataattcaagaatagaatgccaattcaattatctacggaga |
214 |
Q |
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| T |
31561094 |
tgagtaattgacactgccaaaatccagtaatgacggagaaaaaaaaagcaaggacaaatataattcaagaacagaaagccgattcaattatctacggaga |
31560995 |
T |
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| Q |
215 |
tacaattgacataagatgaaaaatgtg |
241 |
Q |
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| T |
31560994 |
tacaattgacataagttgaaaaatgtg |
31560968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 239
Target Start/End: Complemental strand, 31559181 - 31558993
Alignment:
| Q |
43 |
ttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatagtgattaatttgcactgccaaaat |
142 |
Q |
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| T |
31559181 |
ttgtagataggctgaggatagatccgcgacagtgaatattgtcttctgttggagggctgtaac--------tgatatttaataatttgcacagccaaaat |
31559090 |
T |
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| Q |
143 |
ccattaatgatggggaaaaataaggacaaatataattcaagaatagaatgccaattcaattatctacggagatacaattgacataagatgaaaaatg |
239 |
Q |
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| T |
31559089 |
ccagtaatgatggggaaaaataaagacaaatataattcaagaatagaaggccaattcaattatctacagagatacatttgacataaaatgaaaaatg |
31558993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 41 - 203
Target Start/End: Complemental strand, 31556173 - 31556020
Alignment:
| Q |
41 |
agttgtacataggttgaagatagtttcgcgacagtgaatatcgtcttctgttgtagggctgtaaccaatagactgatagtgattaatttgcactgccaaa |
140 |
Q |
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| T |
31556173 |
agttgtacataggctgataatagatccgcgacagtgaatattgtcttcagttggagggctgtaac--------tgatactgattaatttgcactgccaaa |
31556082 |
T |
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| Q |
141 |
atccattaatgatggggaaaaataaggacaaatataattcaagaatagaatgccaattcaatt |
203 |
Q |
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| T |
31556081 |
atccagtaatgatggg-aaaaataaagacaaatataattcaagaatagaatgccaattcaatt |
31556020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 31559272 - 31559210
Alignment:
| Q |
20 |
tagagaatatgtgattgtccaagt----tgtacataggttgaagatagtttcgcgacagtgaa |
78 |
Q |
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| T |
31559272 |
tagagaatatgtgattgtccaagttgtatgtacataggttgaagatagatccgcgacagtgaa |
31559210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 31556261 - 31556200
Alignment:
| Q |
21 |
agagaatatgtgattgtccaagt----tgtacataggttgaagatagtttcgcgacagtgaa |
78 |
Q |
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| T |
31556261 |
agagaatatgtgattgtccaagttgtatgtacataggttgaagatagatccgcgacaatgaa |
31556200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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