View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_36 (Length: 245)
Name: NF18328_low_36
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 55289248 - 55289021
Alignment:
| Q |
1 |
tttgttggcatgataattaattaaagagtgcgttacagtgctacagagtggctttgctggcttaattcatgttagtatatgctgtcaccattagaacact |
100 |
Q |
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| T |
55289248 |
tttgttggcatgataattaattaaagagtgcgttacagtgctacagagtggctttgctggcttaattcatgttagtatatgctgtcaccattagaacact |
55289149 |
T |
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| Q |
101 |
aagcccaaacctcatacctgctcccaaacatcagaattgttgttttaggttcaaattgaatatcaccctcaatagtgaactgaacgagcttatttggtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55289148 |
aagcccaaacctcatacctgctcccaaacatcagaattgttgttttaggttcaaattgaatatcaccctcaatagtgaactgaacgagcttatttggttg |
55289049 |
T |
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| Q |
201 |
atggtcatcggtcatctttcgactttac |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
55289048 |
atggtcatcggtcatctttcgactttac |
55289021 |
T |
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