View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_39 (Length: 238)
Name: NF18328_low_39
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11593081 - 11593302
Alignment:
| Q |
1 |
tccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaacaa |
100 |
Q |
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| T |
11593081 |
tccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaacaa |
11593180 |
T |
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| Q |
101 |
ctttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaa |
200 |
Q |
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| T |
11593181 |
ctttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaa |
11593280 |
T |
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| Q |
201 |
aaggttcatcattgtgtcttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
11593281 |
aaggttcatcattgtgtcttgt |
11593302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11645038 - 11644817
Alignment:
| Q |
1 |
tccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaacaa |
100 |
Q |
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| T |
11645038 |
tccatgttggtgtaatcttgttgatgggtttgttgttgttcaggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaacaacaa |
11644939 |
T |
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| Q |
101 |
ctttgtgtccttctttgacgattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaa |
200 |
Q |
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| T |
11644938 |
ctttgtgaccttctttgacaattgtgtttggttgttgttttggatttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaa |
11644839 |
T |
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| Q |
201 |
aaggttcatcattgtgtcttgt |
222 |
Q |
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| T |
11644838 |
aaggttcatcattgtgtcttgt |
11644817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 34705153 - 34705219
Alignment:
| Q |
145 |
tttggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatca |
211 |
Q |
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| T |
34705153 |
tttggagagaaaatgcttgctgctgtgagtgaagttactaacaggctcaaagctaaaatgttcatca |
34705219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 39126987 - 39126935
Alignment:
| Q |
43 |
ggtaagattgagattttggtgttttggtaaccatcttgatcatattcaacaaca |
96 |
Q |
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| T |
39126987 |
ggtaagattgagattt-ggtgctttggtaactatcttggtcgtattcaacaaca |
39126935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 39126880 - 39126812
Alignment:
| Q |
147 |
tggagagaaaatgcttgctgttgttagtgaagttatgaacaaactcaaagctaaaaggttcatcattgt |
215 |
Q |
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|||| |||||||||| |||| ||| |||||| ||| ||||||||||||||||||| |||| |||||| |
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| T |
39126880 |
tggaaagaaaatgctcgctgctgtgagtgaaattaccaacaaactcaaagctaaaacattcaccattgt |
39126812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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