View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18328_low_40 (Length: 237)
Name: NF18328_low_40
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27420336 - 27420115
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttgaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27420336 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttgaaa |
27420237 |
T |
|
| Q |
101 |
tctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatgtaagaactaattttgagaaacagttgccta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27420236 |
tctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatatatatagatgtaagaactaattttgagaaacagttgccta |
27420137 |
T |
|
| Q |
201 |
cttgaatgattggtgaaggagg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
27420136 |
cttgaatgattggtgaaggagg |
27420115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 27415552 - 27415337
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttgaaa |
100 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||| | | ||||| || |||||||||||| |
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| T |
27415552 |
atactagggacacgaaaacccattgttgtatgtgttaaaacttgagaagaaattgttttaaaataagataaattgt--agcaataac-aagtttttgaaa |
27415456 |
T |
|
| Q |
101 |
tctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatgtaagaactaattttgagaaacagttgccta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||| | || |||||||||||||| ||| |
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| T |
27415455 |
actgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccttgaatataaatagatgaaagaattcatattgagaaacagttggcta |
27415356 |
T |
|
| Q |
201 |
cttgaatgattggtgaagg |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
27415355 |
cttgaatgattggtgaagg |
27415337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 27570261 - 27570469
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttgaaa |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |||| |||| ||||||||| |||||||| |||||||||||| ||||||||||| | | |
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| T |
27570261 |
ataccagggggacgaaaacccatttttgtatgtgttaacacttgagaataaatggtttttaaataaaa---acttttaagcaataaccaagtttttcaga |
27570357 |
T |
|
| Q |
101 |
tctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatgtaagaactaattttgagaaacagttgccta |
200 |
Q |
| |
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| |||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| | ||||| ||| ||||||||| ||| ||| |
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| T |
27570358 |
tttgaatgctttaggatgtgaatgatttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaaagaa-taa--ttgagaaaccattggcta |
27570454 |
T |
|
| Q |
201 |
cttgaatgattggtg |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
27570455 |
cttgaatgattggtg |
27570469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27566163 - 27566375
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttg-aa |
99 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| ||| |||||| |||| || |||||| ||||| | |||| ||||||| | |||||||||| || |
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|
| T |
27566163 |
atactagggaaacgaaaacccattgctgtatgcgttcaaacttgagaaaaattggttt-----taaaaaagacttgtaagcaagaagcaagtttttggaa |
27566257 |
T |
|
| Q |
100 |
atctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatgtaagaactaattttgagaaacagttgcct |
199 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |||| |||| |||| || |
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| T |
27566258 |
attggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtaaccatgaatatatatagataaaag----aatattgaaaaactgttggct |
27566353 |
T |
|
| Q |
200 |
acttgaatgattggtgaaggag |
221 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
27566354 |
acttgaatgatttgtgaaggag |
27566375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 27425740 - 27425576
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaataaaataaacttttaagcaaagaccaagtttttgaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||| | |||| |||| || | | | ||||||| | ||||||||||||| |
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|
| T |
27425740 |
ataccagcaaaacgaaaacccattgttgtatgtgttaaaacttgagaatattcagttttaaaaaaaga----cctgtaagcaagaagcaagtttttgaaa |
27425645 |
T |
|
| Q |
101 |
tctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagat |
169 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
27425644 |
ttggaatggtttaggatgtgaatgatttgtgttggtcctaaatgcttgtagcctttaatatatatagat |
27425576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 27412517 - 27412394
Alignment:
| Q |
88 |
caagtttttgaaatctgaatgctttaggatgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatgtaagaactaattttgag |
187 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||||| |
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|
| T |
27412517 |
caagtttttgaaattaaaatggtttaggatgtgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaag----aatattgag |
27412422 |
T |
|
| Q |
188 |
aaacagttgcctacttgaatgattggtg |
215 |
Q |
| |
|
|||| ||| |||||||||||||||||| |
|
|
| T |
27412421 |
aaaccattggctacttgaatgattggtg |
27412394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 27563561 - 27563686
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggtttaaaaata----aaataaacttttaagcaaagaccaagttttt |
96 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||||||||||| ||||||| | |||||||| | ||| |||||||||||||| ||||||||||| |
|
|
| T |
27563561 |
ataccaggtaaacgaaaacccattgctgagtgtgttaaaacttgagaagaatt--tttaaaaaaagaacaaaaaaacttttaagcaataaccaagttttt |
27563658 |
T |
|
| Q |
97 |
gaaatctgaatgctttaggatgtgaatg |
124 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
27563659 |
gaaatttgaatgctttaggatgtgaatg |
27563686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 27516917 - 27516971
Alignment:
| Q |
116 |
atgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
27516917 |
atgtgaatgatttgtgttggtgctaaatgcttgcagccatgaatatatatagatg |
27516971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 27557329 - 27557263
Alignment:
| Q |
105 |
aatgctttaggatgtgaatg-ttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
27557329 |
aatgctttaggttgtgaatgattttgtgttggtcctaaatgcttgcaactatgaatatatatagatg |
27557263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 27466646 - 27466592
Alignment:
| Q |
116 |
atgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
27466646 |
atgtgaatgatttgtgttggtgctaaaggcttgcagccatgaatatatatagatg |
27466592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 27473719 - 27473665
Alignment:
| Q |
116 |
atgtgaatgttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
27473719 |
atgtgaatgatttgtgttgatgctaaaggcttgcagccatgaatatatatagatg |
27473665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 27423150 - 27423093
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactttagaagaaatggttt |
58 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
27423150 |
ataccagagaaacggatacccattgttgtatgtgttaaaaagttagaagaagtggttt |
27423093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27412598 - 27412556
Alignment:
| Q |
1 |
ataccagggaaacgaaaacccattgttgtatgtgttaaaactt |
43 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
27412598 |
ataccagagaaacgaaaacccatttttgtatgtgttagaactt |
27412556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 27498238 - 27498184
Alignment:
| Q |
117 |
tgtgaatg-ttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||| || |||||||||||||||||| |
|
|
| T |
27498238 |
tgtgaatgattttgtgtttgtcctaactgcttgaaggcatgaatatatatagatg |
27498184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 27469298 - 27469230
Alignment:
| Q |
105 |
aatgctttaggatgtgaatg-ttttgtgttggtcctaaatgc--ttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||| || ||||||||||| |||| |||||||||||||||| ||| |||||| |||||||||||||| |
|
|
| T |
27469298 |
aatgccttgggatgtgaatggttttttgttggtcctaaatgcctttgcagccattaatatatatagatg |
27469230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 27526420 - 27526479
Alignment:
| Q |
114 |
ggatgtgaatg-ttttgtgttggtcctaaatgcttgt--agccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| | ||||||||||||||||||||| |
|
|
| T |
27526420 |
ggatgtgaatgattttttgttggtgctaaatgcttttgcagccatgaatatatatagatg |
27526479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 1754547 - 1754602
Alignment:
| Q |
116 |
atgtgaatg-ttttgtgttggtcctaaatgcttgtagccatgaatatatatagatg |
170 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
1754547 |
atgtgaatgattttgtgttggtcctaaatgcttcaaggcatgactatatatagatg |
1754602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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