View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18328_low_41 (Length: 224)

Name: NF18328_low_41
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18328_low_41
NF18328_low_41
[»] chr2 (4 HSPs)
chr2 (17-203)||(36095489-36095675)
chr2 (88-197)||(12023724-12023834)
chr2 (133-196)||(40100528-40100591)
chr2 (106-191)||(38764213-38764298)
[»] chr3 (5 HSPs)
chr3 (99-197)||(32324563-32324662)
chr3 (70-171)||(5404449-5404551)
chr3 (70-182)||(34964184-34964297)
chr3 (70-197)||(34199083-34199209)
chr3 (74-161)||(41904878-41904966)
[»] chr1 (2 HSPs)
chr1 (99-197)||(50414516-50414614)
chr1 (125-193)||(38753637-38753705)
[»] chr4 (5 HSPs)
chr4 (74-199)||(56576422-56576545)
chr4 (145-196)||(6418781-6418832)
chr4 (138-197)||(48190725-48190784)
chr4 (74-161)||(53380956-53381043)
chr4 (155-196)||(19195630-19195671)
[»] chr8 (1 HSPs)
chr8 (101-197)||(34195093-34195189)
[»] chr7 (1 HSPs)
chr7 (108-197)||(24890484-24890573)
[»] chr6 (3 HSPs)
chr6 (106-199)||(22506294-22506387)
chr6 (103-160)||(4003963-4004020)
chr6 (74-158)||(5455658-5455742)
[»] scaffold0034 (1 HSPs)
scaffold0034 (106-160)||(92601-92655)
[»] chr5 (1 HSPs)
chr5 (148-198)||(33179448-33179498)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 36095675 - 36095489
Alignment:
Q  17 tgaatgatataagttgtggcctggtttggaagttcagtagtagtattttggtctttggtgttaatcctttggttcataggggaagggggcctagtaatct 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36095675 tgaatgatatatgttgtggcctggtttggaagttcagtagtagtattttggtctttggtgttaatcctttggttcataggggaagggggcctagtaatct 36095576  T
Q  117 ggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattcatgtgt 203  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36095575 ggagttcggctgggaggtaagtaaagtctggccaagaattgttcccaccaggaattgaacttgggttctcccgaacgattcatgtgt 36095489  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 12023724 - 12023834
Alignment:
Q  88 gttcataggggaagggggc-ctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctc 186  Q
    |||| |||||||||||||| |||||||||||||||||||    || |||| || || ||| ||||||||||||||  |||||||| |||||||||| |||    
T  12023724 gttcctaggggaagggggctctagtaatctggagttcggtcatgaggtaagtacagcctgaccaagaattgttccacccaggaatcgaactcgggtcctc 12023823  T
Q  187 ccgaacgattc 197  Q
    |||||| ||||    
T  12023824 ccgaacaattc 12023834  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 40100528 - 40100591
Alignment:
Q  133 gtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgatt 196  Q
    |||| ||||||||||||||||||||||||  || |||||||||||||||||||||  |||||||    
T  40100528 gtaagtaaagtctggccaagaattgttccaccctggaattgaactcgggttctccacaacgatt 40100591  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 38764213 - 38764298
Alignment:
Q  106 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaa 191  Q
    |||||||||| ||||||| | ||||| |||| |||||||||| ||||||||||| |  ||| |||| ||| |||||||||||||||    
T  38764213 cctagtaatccggagttcagttgggaggtaagtaaagtctggtcaagaattgttgcacccaagaatcgaattcgggttctcccgaa 38764298  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 32324563 - 32324662
Alignment:
Q  99 aagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcggg-ttctcccgaacgattc 197  Q
    |||||| |||||||||| |||||| ||| |||| |||| ||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||    
T  32324563 aaggggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaaactcgggtttctcccgaacgattc 32324662  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 5404551 - 5404449
Alignment:
Q  70 tttggtgttaatcctttggttcataggggaagggggcct-agtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagg 168  Q
    ||||||||||| |||  ||| | |||||||||||| ||| ||||||| ||||||| ||||| | |||| |||||||||||||| ||||||||||| ||||    
T  5404551 tttggtgttaaccctccggtgcctaggggaaggggcccttagtaatccggagttcagctggcaggtaagtaaagtctggccaataattgttcccatcagg 5404452  T
Q  169 aat 171  Q
    |||    
T  5404451 aat 5404449  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 34964297 - 34964184
Alignment:
Q  70 tttggtgttaatcctttggttcataggggaagggggcc-tagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagg 168  Q
    ||||| ||||| |||  ||||| |||||||| || ||| ||||||  |||||||||||||||| |||| |||||||||| ||| |||||||||||  |||    
T  34964297 tttggagttaaccctccggttcctaggggaaaggtgccatagtaagttggagttcggctgggaggtaagtaaagtctggtcaataattgttcccattagg 34964198  T
Q  169 aattgaactcgggt 182  Q
    ||| ||||||||||    
T  34964197 aatcgaactcgggt 34964184  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 34199083 - 34199209
Alignment:
Q  70 tttggtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccagga 169  Q
    |||| |||||| |||  ||||| | |||||||||| |||||| |||  ||||||||| |||| |||| ||||  ||||||||||||||||||   |||||    
T  34199083 tttgctgttaaccctccggttccttggggaaggggccctagtgatccagagttcggccgggaggtaagtaaatcctggccaagaattgttccacacagga 34199182  T
Q  170 attgaactcgggttctcccgaacgattc 197  Q
    || ||| ||| |||||||| ||||||||    
T  34199183 atcgaa-tcgagttctcccaaacgattc 34199209  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 41904878 - 41904966
Alignment:
Q  74 gtgttaatcctttggttcataggggaagggggc-ctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcc 161  Q
    ||||||| |||| ||||| | |||||  ||||| ||||||||| |||||| ||||| ||  ||| |||||||||| |||||||||||||    
T  41904878 gtgttaacccttcggttcttgggggagaggggcgctagtaatccggagtttggctgcgagctaaataaagtctggtcaagaattgttcc 41904966  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 50414516 - 50414614
Alignment:
Q  99 aagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 197  Q
    |||||| |||||||||| | ||||||||  ||| ||||  ||||||| |||||||||||||||  |||||||||||||||||||||||| |||| ||||    
T  50414516 aaggggccctagtaatccgtagttcggccaggaggtaagaaaagtctagccaagaattgttccacccaggaattgaactcgggttctcctgaacaattc 50414614  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 38753705 - 38753637
Alignment:
Q  125 gctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacg 193  Q
    ||||||| |||| ||||||| ||||||| ||| ||||   ||||||| |||||||||||||||||||||    
T  38753705 gctgggaggtaagtaaagtccggccaaggatttttccagtcaggaatcgaactcgggttctcccgaacg 38753637  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 56576545 - 56576422
Alignment:
Q  74 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattg 173  Q
    ||||||| |||  ||||||||||||| |||| |||||||| | |||||||||| |||| |||| |||||| |||| | ||||| ||||||||||| ||      
T  56576545 gtgttaaccctccggttcataggggacgggg-cctagtaacccggagttcggccgggaggtaagtaaagtttggcta-gaattattcccaccaggtatca 56576448  T
Q  174 aactcgggttctcccgaacgattcat 199  Q
    ||||||||||||| ||||||||||||    
T  56576447 aactcgggttctctcgaacgattcat 56576422  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 6418781 - 6418832
Alignment:
Q  145 tggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgatt 196  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  6418781 tggccaagaattgttccacacaggaattgaactcgggttctcccgaacgatt 6418832  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 197
Target Start/End: Complemental strand, 48190784 - 48190725
Alignment:
Q  138 taaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 197  Q
    ||||||||||||| ||||||||||  | ||||||  ||||||||||||||||||||||||    
T  48190784 taaagtctggccaggaattgttccacctaggaatcaaactcgggttctcccgaacgattc 48190725  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 53381043 - 53380956
Alignment:
Q  74 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcc 161  Q
    ||||||| |||  ||||| ||||||||  |||||| |||||| | |||| ||| |||| |||| ||||| ||||||||||||||||||    
T  53381043 gtgttaaccctccggttcttaggggaaaagggcctggtaatccgtagtttggccgggaggtaagtaaagcctggccaagaattgttcc 53380956  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 19195630 - 19195671
Alignment:
Q  155 ttgttcccaccaggaattgaactcgggttctcccgaacgatt 196  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  19195630 ttgttccacccaggaatcgaactcgggttctcccgaacgatt 19195671  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 34195093 - 34195189
Alignment:
Q  101 gggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 197  Q
    |||| ||| |||||||||||| | || |||| |||| ||||| |||||||| ||||||||| |  ||||||||||||||||||||||| ||||||||    
T  34195093 ggggccctggtaatctggagtacagccgggaggtaagtaaagcctggccaaaaattgttcctagtaggaattgaactcgggttctcccaaacgattc 34195189  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 24890573 - 24890484
Alignment:
Q  108 tagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattc 197  Q
    ||||||||| |||| ||||| | | |||| ||||||||| ||||||||||||||||  ||||||  |||||||||||||| ||| |||||    
T  24890573 tagtaatctagagtccggctagaaggtaagtaaagtctgaccaagaattgttcccattaggaatcaaactcgggttctcctgaaagattc 24890484  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 22506387 - 22506294
Alignment:
Q  106 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattcat 199  Q
    |||||||| | |||||||||| | || ||||  | ||||||||||| ||||||||| || |||||| |||||||| ||||||| ||| ||||||    
T  22506387 cctagtaacccggagttcggcagtgaggtaaggatagtctggccaataattgttccaactaggaatcgaactcggcttctcccaaacaattcat 22506294  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 4004020 - 4003963
Alignment:
Q  103 gggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttc 160  Q
    ||||||||||||| ||||||||||  ||| |||| ||| |||||||||| ||||||||    
T  4004020 gggcctagtaatccggagttcggccaggaggtaagtaaggtctggccaataattgttc 4003963  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 5455742 - 5455658
Alignment:
Q  74 gtgttaatcctttggttcataggggaagggggcctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgt 158  Q
    |||||||||||||||||| ||||| |||||| | ||||||||  ||||||| | |||| |||| |||| | || ||| |||||||    
T  5455742 gtgttaatcctttggttcctagggaaaggggtcttagtaatcaagagttcgtccgggaggtaaataaaatatgaccatgaattgt 5455658  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 92601 - 92655
Alignment:
Q  106 cctagtaatctggagttcggctgggaagtaattaaagtctggccaagaattgttc 160  Q
    |||| ||||||||||||||| || || |||| |||||||||||||| ||||||||    
T  92601 cctaataatctggagttcggttgagaggtaagtaaagtctggccaaaaattgttc 92655  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 33179498 - 33179448
Alignment:
Q  148 ccaagaattgttcccaccaggaattgaactcgggttctcccgaacgattca 198  Q
    |||||||||||| ||| ||||||| |||||||| |||||| ||||||||||    
T  33179498 ccaagaattgtttccatcaggaatcgaactcggcttctcctgaacgattca 33179448  T

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