View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18328_low_43 (Length: 213)

Name: NF18328_low_43
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18328_low_43
NF18328_low_43
[»] chr2 (12 HSPs)
chr2 (17-199)||(39144695-39144877)
chr2 (17-179)||(39188655-39188817)
chr2 (21-199)||(39493344-39493522)
chr2 (22-195)||(39425439-39425612)
chr2 (62-179)||(39604435-39604552)
chr2 (62-195)||(39099690-39099823)
chr2 (62-135)||(39503988-39504061)
chr2 (61-165)||(2362812-2362916)
chr2 (41-179)||(39472689-39472827)
chr2 (42-184)||(39380420-39380562)
chr2 (28-133)||(39421098-39421203)
chr2 (161-193)||(39126591-39126623)
[»] chr4 (1 HSPs)
chr4 (68-179)||(33152231-33152342)
[»] chr3 (1 HSPs)
chr3 (62-179)||(51576104-51576221)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 39144877 - 39144695
Alignment:
Q  17 atattagatatcttaccagatatcttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaa 116  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39144877 atattagatatcttaccagatattttatttgcaaatcccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccaaaaagctttaaaa 39144778  T
Q  117 catcatcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39144777 catcatcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtg 39144695  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 39188655 - 39188817
Alignment:
Q  17 atattagatatcttaccagatatcttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaa 116  Q
    ||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||  ||||||||| ||||||||||||||| |||||||||||||    
T  39188655 atattagatatcttaccagatattttatctgcaaaacctaaggccccaaatagctctacgcctatgtcgtactgagaaacaagtccaaaaagctttaaaa 39188754  T
Q  117 catcatcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaa 179  Q
    ||||||||||||||||||| ||| |||  ||||||||||| ||||||||||||||||| ||||    
T  39188755 catcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaa 39188817  T

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Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 39493344 - 39493522
Alignment:
Q  21 tagatatcttaccagatatcttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatc 120  Q
    |||||||||| || ||||| |||| ||||||||||| ||||||||||||||| ||| | |||| |||||||||||||||||| || ||||||||||| ||    
T  39493344 tagatatcttgcctgatattttatctgcaaaacccatggccccaaacagctccacaacaatgttgtgctgagaaacaagtccaaatagctttaaaacctc 39493443  T
Q  121 atcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtg 199  Q
    ||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  39493444 atcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtg 39493522  T

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Target: chr2; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 195
Target Start/End: Original strand, 39425439 - 39425612
Alignment:
Q  22 agatatcttaccagatatcttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatca 121  Q
    ||||||||| || ||||| |||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||| ||     
T  39425439 agatatcttgcctgatattttatctgcaaaacccatggccccaaacagctctacagctaagttgtgctgagaaacaagttcgaaaagcttcaaaacttct 39425538  T
Q  122 tcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttc 195  Q
    ||||| | |||||| ||| |||| ||||||||||||||||| ||||||||||| ||||  ||||||||||||||    
T  39425539 tcttcgtcgaaagaaggaaccagtccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttc 39425612  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 39604552 - 39604435
Alignment:
Q  62 ccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaa 161  Q
    |||||||||||||||||||| | || ||||| | |||   |||||||||||||||| |||||||||| |||||| ||| |||  ||||||||||||| ||    
T  39604552 ccaaacagctctacagctatcttgtcctgagcagcaaactcgaaaagctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaa 39604453  T
Q  162 ggagtagaaaacctagaa 179  Q
    ||||||||||||| ||||    
T  39604452 ggagtagaaaacccagaa 39604435  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 195
Target Start/End: Complemental strand, 39099823 - 39099690
Alignment:
Q  62 ccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaa 161  Q
    ||||| |||| ||||||||| | |||||||| | |||  || |||||||||||||| ||||||||||  ||||| ||| |||    ||||||||||||||    
T  39099823 ccaaagagctttacagctatcttgtgctgagcagcaaacccaaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaa 39099724  T
Q  162 ggagtagaaaacctagaatcgccgctgaattttc 195  Q
    ||||||||||||| |||| |||| | ||||||||    
T  39099723 ggagtagaaaaccaagaaccgccaccgaattttc 39099690  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 39503988 - 39504061
Alignment:
Q  62 ccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaaga 135  Q
    |||||||||||||||||||| |||||||||| | |||  || |||||||| ||||| |||||||||| ||||||    
T  39503988 ccaaacagctctacagctatctcgtgctgagcagcaaaaccaaaaagcttgaaaacttcatcttcatcgaaaga 39504061  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 2362916 - 2362812
Alignment:
Q  61 cccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacaga 160  Q
    ||||||||||||||||| ||| | ||| |||| | |||  || |||||||||||||  |||||||||| |||||| | | |||  |||||||||||||||    
T  2362916 cccaaacagctctacagatatcttgtgttgagcagcaaacccaaaaagctttaaaatttcatcttcatcgaaagaagaaaccaatccataaattgacaga 2362817  T
Q  161 aggag 165  Q
    |||||    
T  2362816 aggag 2362812  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 179
Target Start/End: Original strand, 39472689 - 39472827
Alignment:
Q  41 ttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggac 140  Q
    ||||||||||||||||||| || |||||| || |||||||| | |||||||| ||||| | |||| ||||  || || ||||||||||  ||||| | |     
T  39472689 ttatttgcaaaacccaaggtccgaaacagttccacagctatcttgtgctgagcaacaaatgcgaagagctccaagacttcatcttcatcaaaagaagtaa 39472788  T
Q  141 ccagcccataaattgacagaaggagtagaaaacctagaa 179  Q
     ||   |||||||||||| ||| ||||||||||| ||||    
T  39472789 gcaattcataaattgacaaaagcagtagaaaaccaagaa 39472827  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 184
Target Start/End: Original strand, 39380420 - 39380562
Alignment:
Q  42 tatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacc 141  Q
    ||||||||||||||| ||||| ||||| ||| | |||||| | |||||||| ||| | | | |||||||  ||||  |||||||||| |||||| | |      
T  39380420 tatttgcaaaacccagggcccgaaacatctccatagctatcttgtgctgagcaaccaatgcaaaaagctccaaaatttcatcttcatcgaaagaagtaag 39380519  T
Q  142 cagcccataaattgacagaaggagtagaaaacctagaatcgcc 184  Q
    ||  ||||||||||||| ||| |||||||| || |||| ||||    
T  39380520 caatccataaattgacaaaagcagtagaaatccaagaaccgcc 39380562  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 39421098 - 39421203
Alignment:
Q  28 cttaccagatatcttatttgcaaaacccaaggccccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttca 127  Q
    ||||||||| |  |||||||||||||||| || | |||||| ||| || ||||| | |||||||| ||||| | | |||||||  || || |||||||||    
T  39421098 cttaccagaaactttatttgcaaaacccagggtctcaaacaactcaactgctatcttgtgctgagcaacaaatgcaaaaagctccaacacttcatcttca 39421197  T
Q  128 ttgaaa 133  Q
    ||||||    
T  39421198 ttgaaa 39421203  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 39126623 - 39126591
Alignment:
Q  161 aggagtagaaaacctagaatcgccgctgaattt 193  Q
    |||||||||||||| ||||||||||||||||||    
T  39126623 aggagtagaaaacccagaatcgccgctgaattt 39126591  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 33152342 - 33152231
Alignment:
Q  68 agctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaaggagta 167  Q
    |||||||| ||||| | ||| |||| ||| | ||| |||||||||||||| ||||||||||  ||||||| | ||| |||||||||||||||||| || |    
T  33152342 agctctaccgctatcttgtgttgagcaacgattccaaaaagctttaaaacttcatcttcatcaaaagatgaaaccaacccataaattgacagaagtagca 33152243  T
Q  168 gaaaacctagaa 179  Q
    ||||||| ||||    
T  33152242 gaaaacccagaa 33152231  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 179
Target Start/End: Complemental strand, 51576221 - 51576104
Alignment:
Q  62 ccaaacagctctacagctatgtcgtgctgagaaacaagtccgaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaa 161  Q
    |||||||||||||| ||||| | |||||||| ||||| ||| |||  ||| ||||  ||||||| ||  ||| | ||| |||  ||||||||||||||||    
T  51576221 ccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatctttatcaaaataaggaaccaatccataaattgacagaa 51576122  T
Q  162 ggagtagaaaacctagaa 179  Q
    |||| ||| |||| ||||    
T  51576121 ggagcagataaccaagaa 51576104  T

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