View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18328_low_6 (Length: 622)
Name: NF18328_low_6
Description: NF18328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18328_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 11359318 - 11359853
Alignment:
| Q |
17 |
aggaaaactgttcatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattgttgttttcctcgtcttgtattgcg |
116 |
Q |
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| T |
11359318 |
aggaaaactgtcgatatttctccaacaatcatcgctcaaactgagaattctgacctgacttctccatggaccatatttgttttcttcatctcctttggca |
11359417 |
T |
|
| Q |
117 |
caaaactccacgactttgtaacttccagttaaaatgtcacaaccaaaagtgaacttcaaagagcctaatagagacctttgttggttatagtcatgatcac |
216 |
Q |
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| T |
11359418 |
cgaaactccacggtcttgtaagttccacttaaaatgccacaaccaaaagtgaacttcaaacaacctaatagatatcgcctacggt---agtcataataac |
11359514 |
T |
|
| Q |
217 |
aactcacaaatgcttcagaaccaaaactgaacttcaaaccgtatagctgaaggttatagtcatgatatgtcccaaatgctttagatcttgttcccgtggc |
316 |
Q |
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| T |
11359515 |
aactcccaaatgcttcagaaccaaaattgaacctcaaactgcgtagctgaaggttatagtcatgatttgtccctaatgctttcgatcttgttcctgtagc |
11359614 |
T |
|
| Q |
317 |
agggttcaatatacggaaccagtacttatgataccccatattatcagaacagaaaataaagcataccaatccgttgcaggaattaacaaccttgcagttg |
416 |
Q |
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| T |
11359615 |
agggttccatatacgaaaccaataattatgatactccttattatcagaacagaaaataaagcataacaatccgttgcaggaaataacaaccttgcagttg |
11359714 |
T |
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| Q |
417 |
tcattcaaaccaccaccgcggtggcaaaagtcactggaaacagtgatggacggattctggagtaaacaagctatggggagggattggacagtcttcatag |
516 |
Q |
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| T |
11359715 |
tcattcaaaccaccaccgtcgtagcaaaagtcaccagaaacagtgatggacggattcttgagtaaacgagtgatggggagggattggatagtccgcatag |
11359814 |
T |
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| Q |
517 |
ggtatacccaacatggtggtgtgagtatgaggcgcgggg |
555 |
Q |
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| T |
11359815 |
ggtatacccaacatggtggtttgagtatgaggcgtgggg |
11359853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 11338911 - 11339024
Alignment:
| Q |
14 |
caaaggaaaactgttcatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattg--ttgttttcctcgtcttgta |
111 |
Q |
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| T |
11338911 |
caaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattgttttgttttcctcgtcttgta |
11339010 |
T |
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| Q |
112 |
ttgcgcaaaactcc |
125 |
Q |
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| T |
11339011 |
ttgcgcgaaactcc |
11339024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 11345437 - 11345610
Alignment:
| Q |
14 |
caaaggaaaactgttcatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattgttgttttcctcgtcttgtatt |
113 |
Q |
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| T |
11345437 |
caaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacccgacttctccatgg---agagttgtttccttcatctcgttct |
11345533 |
T |
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| Q |
114 |
gcgcaaaactccacgactttgtaacttccagttaaaatgtcacaaccaaaagtgaacttcaaagagcctaatagaga |
190 |
Q |
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| T |
11345534 |
gcgcaaaactctaccaccttgtaagtttcggttaaaatgtcacaaccaaaagtgaaattcaaacatcctaatagaga |
11345610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 23840416 - 23840265
Alignment:
| Q |
25 |
tgttcatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattgttgttttcctcgtcttgtattgcgcaaaactc |
124 |
Q |
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|||| ||||||||||||||||||||| |||| || |||||||||| |||||| || ||||||||| ||||| || || | || | ||| | |||||| |
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| T |
23840416 |
tgttgatatttctccaacaatcatcatccaaattgggaactctgacctgacttttcaatagaccatggttgtctttatcttgttct-ttgtg--aaactc |
23840320 |
T |
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| Q |
125 |
cacgactttgtaacttccagttaaaatgtcacaaccaaaagtgaacttcaaagag |
179 |
Q |
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| T |
23840319 |
caacacattgtaagttccagttaaaatgtcacagccaaaagtgaacattaaagag |
23840265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 23847515 - 23847651
Alignment:
| Q |
31 |
tatttctccaacaatcatcactcaaactgagaactctgacatgacttctccatagaccattgttgttttcctcgtcttgtattgcgcaaaactccacgac |
130 |
Q |
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| T |
23847515 |
tatttctccagcaatcatcatctaaattgagaactctgacctgacttttcaatagaccatggttgtctttatctt--tctctt-cacgaaactccaccac |
23847611 |
T |
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| Q |
131 |
tttgtaacttccagttaaaatgtcacaaccaaaagtgaac |
170 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
23847612 |
cttgtaagttccagttaaaatgtcacaaccaaaagtgaac |
23847651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 19747058 - 19747111
Alignment:
| Q |
30 |
atatttctccaacaatcatcactcaaactgagaactctgacatgacttctccat |
83 |
Q |
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| T |
19747058 |
atatttctccaacaattatcacttaaactgaaaattctgacctgacttctccat |
19747111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 569 - 607
Target Start/End: Complemental strand, 5978263 - 5978225
Alignment:
| Q |
569 |
ggtgaaagttggattagagatgagagcgttccatgactt |
607 |
Q |
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| T |
5978263 |
ggtgaaagttggattggagatgagagtgttccatgactt |
5978225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 24030896 - 24030850
Alignment:
| Q |
119 |
aaactccacgactttgtaacttccagttaaaatgtcacaaccaaaag |
165 |
Q |
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| T |
24030896 |
aaactccagcaccttgtaagttccagttaaaatgtcacaaccaaaag |
24030850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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