View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_high_1 (Length: 536)
Name: NF18329_high_1
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 192 - 527
Target Start/End: Complemental strand, 13629457 - 13629131
Alignment:
| Q |
192 |
gtttaacagtgtggtaactaataagtatccgaaatatgttggtttagtagccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
291 |
Q |
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| T |
13629457 |
gtttaatagtgtggtaactaataagtatctgaaatatgttggtttaataaccaaggtataggcttctgctatatagttcagtatgagaaagcatacatct |
13629358 |
T |
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| Q |
292 |
tgaatggaatgaataatagacgcaactatttattgtgttaaggggaatataattttgactcagatgttctggctttatgtattagtctttaggcagcctt |
391 |
Q |
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| T |
13629357 |
tgaat---------aatagacgcaactatttattgtgttgaggggaatataattttgactcagatgttctggctttatgtattagtctttaggcaacctt |
13629267 |
T |
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| Q |
392 |
gtcactgaccttaagttgtacattaatgttgttttgcagtgatattgtcaaattactacgacaagaatgttatgtcatgttgtatcagattcagaaacac |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13629266 |
gtcactgaccttaagttgtacattaatgttgttttgcagtgatattgtcaaattactacgacaagaatgttatgtcatgttgtatcagattcagaaacac |
13629167 |
T |
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| Q |
492 |
ttccagtggaattcacgtccagtcaaatatgatgat |
527 |
Q |
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| T |
13629166 |
ttccagtggaattcacgtccagtcaaatatgatgat |
13629131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 452 - 525
Target Start/End: Original strand, 13511432 - 13511505
Alignment:
| Q |
452 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatg |
525 |
Q |
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| T |
13511432 |
acaagaaagttatgtcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatg |
13511505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 525
Target Start/End: Complemental strand, 21778995 - 21778922
Alignment:
| Q |
452 |
acaagaatgttatgtcatgttgtatcagattcagaaacacttccagtggaattcacgtccagtcaaatatgatg |
525 |
Q |
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||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||| |
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| T |
21778995 |
acaagaaagttatctcatcttgtatcagattcagaaacacttccagtggaattcgcctccagtcagatatgatg |
21778922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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