View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18329_high_10 (Length: 312)
Name: NF18329_high_10
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 51 - 304
Target Start/End: Complemental strand, 10794583 - 10794330
Alignment:
| Q |
51 |
atagtcatgttatggtcctataaataaagccataatcaagcagcaaataattcaaaacacacacaactctaaaaatgaactcctttcgtctcatagcaac |
150 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794583 |
atagtcattttatggccctataaataaagccataatcaagcagcaaataattcaaaacacacacaactctaaaaatgaactcctttcgtctcatagcaac |
10794484 |
T |
|
| Q |
151 |
ttctttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttttatagcaaaacttgtccaaatcttaat |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794483 |
ttttttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttttatagcaaaacttgtccaaatcttaat |
10794384 |
T |
|
| Q |
251 |
tccattgtccgcgaaatcattaggaactttactaagattgagccccgagtgcct |
304 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10794383 |
tccattgtccgcgaaatcgttaggaactttactaagattgagccccgaatgcct |
10794330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 11144964 - 11145098
Alignment:
| Q |
153 |
ctttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttttatagcaaaacttgtccaaatcttaattc |
252 |
Q |
| |
|
||||||||| ||||| | | ||||||||||||||||||| ||| |||||||| ||| ||||| |||||||||||||||||||||||||| ||| ||| |
|
|
| T |
11144964 |
ctttgtgttttattgtggctttgtttggagtgttacctttcccttccaatgcacaacttaatccatccttttatagcaaaacttgtccaaatgttagttc |
11145063 |
T |
|
| Q |
253 |
cattgtccgcgaaatcattaggaactttactaaga |
287 |
Q |
| |
|
||||||||| ||| |||| || ||| || |||||| |
|
|
| T |
11145064 |
cattgtccgggaagtcataagaaacgtttctaaga |
11145098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 11148244 - 11148349
Alignment:
| Q |
153 |
ctttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttttatagcaaaacttgtccaaatcttaattc |
252 |
Q |
| |
|
||||||| ||||||| |||||| |||||| |||||| || | |||||||||||| ||||||||| ||||||| || || |||||||||||| ||| ||| |
|
|
| T |
11148244 |
ctttgtgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttc |
11148343 |
T |
|
| Q |
253 |
cattgt |
258 |
Q |
| |
|
|||||| |
|
|
| T |
11148344 |
cattgt |
11148349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 240
Target Start/End: Original strand, 11109260 - 11109376
Alignment:
| Q |
124 |
aatgaactcctttcgtctcatagcaacttctttgtgttgtattgcagttgtgtttggagtgttacctttatgttcaaatgcacagcttgatccagccttt |
223 |
Q |
| |
|
||||||||| |||||| |||| | ||| ||||||| ||| | | ||||||||||||| |||| || | |||||||||||| ||||||||| |||| |
|
|
| T |
11109260 |
aatgaactcatttcgtgtcattgtaacagctttgtgctgtgtagtggttgtgtttggaggactacccttctcttcaaatgcacaacttgatccatacttt |
11109359 |
T |
|
| Q |
224 |
tatagcaaaacttgtcc |
240 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
11109360 |
tatggcaaaacttgtcc |
11109376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University