View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_high_19 (Length: 253)
Name: NF18329_high_19
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 40414717 - 40414618
Alignment:
| Q |
138 |
attctagagtgtaactcatttttgtatgttcataaggcatataaacaatcatttagcctcttccgcagatacaccaaagaagagttgtgaagtttatggt |
237 |
Q |
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| T |
40414717 |
attctagagtgtaactcatttttgtatgttcataaggcatataaacaatcatttagcctcttccgcagatacaccaaagaagagttgtgaagtttatggt |
40414618 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 40414829 - 40414793
Alignment:
| Q |
13 |
aacctgtggagtcttgaaaatctatgttttaagagtt |
49 |
Q |
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| T |
40414829 |
aacctgtagagtcttgaaaatctatgttttaaaagtt |
40414793 |
T |
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