View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_high_22 (Length: 242)
Name: NF18329_high_22
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 465355 - 465118
Alignment:
| Q |
1 |
taacgagatcttctcttttcatattctcgccgtatttgtctttgaaatcgtgtttggacatattgagttcgaaatcaccgacgaggtagttccggtcttt |
100 |
Q |
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| T |
465355 |
taacgagatcttctcttttcatattctcgccgtatttgtctttgaaatcgtgtttggacatgttgagttcgaaatcaccgacgaggtagttccggtcttt |
465256 |
T |
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| Q |
101 |
gagcatttgcatcactgttttgcggattctgtatagtcgcgttatttcttcctctgaaaacaccatcgtccgtcttcttggtggtggtgtcgcagaaggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
465255 |
gagcatttgcatcactgttttgcggattctgtatagtcgcgttatttcttcctctgaaaacaccat----cgtcttcttggtggtggtgtcgcagaaggc |
465160 |
T |
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| Q |
201 |
taaattggat--ttggtgattgattgacaacaaatacctatg |
240 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
465159 |
taaattggattcttggtgattgattgacaacaaatacctatg |
465118 |
T |
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