View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18329_low_11 (Length: 329)

Name: NF18329_low_11
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18329_low_11
NF18329_low_11
[»] chr8 (24 HSPs)
chr8 (3-313)||(28901394-28901704)
chr8 (3-233)||(22894584-22894818)
chr8 (10-210)||(24120085-24120285)
chr8 (3-210)||(16052331-16052538)
chr8 (3-122)||(12956431-12956550)
chr8 (10-122)||(14977168-14977280)
chr8 (3-117)||(6358645-6358759)
chr8 (3-224)||(5570195-5570424)
chr8 (5-124)||(11310260-11310379)
chr8 (3-124)||(16054234-16054355)
chr8 (10-122)||(32239229-32239341)
chr8 (3-101)||(13081991-13082090)
chr8 (26-204)||(29291629-29291809)
chr8 (3-124)||(29047373-29047491)
chr8 (8-203)||(10866849-10867044)
chr8 (3-124)||(28902029-28902150)
chr8 (8-125)||(13530164-13530281)
chr8 (8-125)||(13619703-13619820)
chr8 (3-106)||(26882365-26882469)
chr8 (36-125)||(28252468-28252557)
chr8 (61-125)||(12774955-12775019)
chr8 (64-116)||(30543711-30543763)
chr8 (140-205)||(24932386-24932452)
chr8 (8-52)||(27097860-27097904)
[»] chr2 (25 HSPs)
chr2 (6-313)||(28278480-28278785)
chr2 (3-126)||(21505193-21505316)
chr2 (24-120)||(32619586-32619682)
chr2 (5-124)||(25473977-25474096)
chr2 (6-124)||(35707743-35707861)
chr2 (6-85)||(30998750-30998829)
chr2 (61-218)||(39730293-39730450)
chr2 (6-120)||(19949611-19949725)
chr2 (8-123)||(1733042-1733156)
chr2 (3-65)||(35031701-35031763)
chr2 (3-86)||(21843056-21843139)
chr2 (3-86)||(21844683-21844766)
chr2 (66-197)||(31449824-31449955)
chr2 (140-206)||(17415361-17415427)
chr2 (3-87)||(16593804-16593890)
chr2 (53-115)||(31914037-31914099)
chr2 (3-126)||(18236356-18236479)
chr2 (10-205)||(32276574-32276769)
chr2 (6-59)||(15829139-15829192)
chr2 (15-121)||(19540980-19541086)
chr2 (3-52)||(17152165-17152214)
chr2 (25-203)||(22388828-22389009)
chr2 (62-121)||(20963725-20963784)
chr2 (140-203)||(22510821-22510884)
chr2 (140-203)||(27918173-27918236)
[»] chr4 (21 HSPs)
chr4 (32-313)||(1696652-1696931)
chr4 (3-204)||(1676349-1676550)
chr4 (3-204)||(1682877-1683078)
chr4 (3-126)||(18897929-18898052)
chr4 (3-121)||(5906774-5906893)
chr4 (10-124)||(12111393-12111505)
chr4 (6-96)||(25315288-25315378)
chr4 (5-124)||(9783039-9783158)
chr4 (5-124)||(15192143-15192262)
chr4 (3-124)||(10320273-10320394)
chr4 (5-97)||(4953649-4953741)
chr4 (4-116)||(34864346-34864458)
chr4 (3-96)||(27302746-27302839)
chr4 (8-125)||(9288149-9288266)
chr4 (25-110)||(25050141-25050226)
chr4 (17-121)||(22119589-22119693)
chr4 (3-61)||(47024810-47024868)
chr4 (16-125)||(17339880-17339989)
chr4 (61-132)||(16442371-16442441)
chr4 (23-110)||(31859954-31860041)
chr4 (39-87)||(5125581-5125629)
[»] chr5 (28 HSPs)
chr5 (3-313)||(24841512-24841814)
chr5 (6-206)||(17027385-17027585)
chr5 (5-124)||(17382091-17382210)
chr5 (6-124)||(12340071-12340187)
chr5 (6-124)||(25594749-25594867)
chr5 (6-169)||(11274387-11274550)
chr5 (7-101)||(24517317-24517411)
chr5 (24-108)||(30072134-30072218)
chr5 (3-110)||(18222447-18222554)
chr5 (8-126)||(22967901-22968019)
chr5 (6-91)||(26330125-26330210)
chr5 (5-121)||(16622723-16622838)
chr5 (3-124)||(15205585-15205704)
chr5 (6-108)||(22229764-22229862)
chr5 (3-108)||(16634001-16634107)
chr5 (3-97)||(25680563-25680657)
chr5 (40-108)||(25075328-25075396)
chr5 (40-108)||(25133297-25133365)
chr5 (140-206)||(11274549-11274615)
chr5 (3-109)||(26070429-26070535)
chr5 (55-108)||(22754904-22754957)
chr5 (8-51)||(24410988-24411031)
chr5 (3-126)||(24846199-24846322)
chr5 (140-198)||(22644054-22644112)
chr5 (3-45)||(24268574-24268616)
chr5 (3-45)||(24345203-24345245)
chr5 (3-52)||(20694652-20694701)
chr5 (8-52)||(23157847-23157891)
[»] chr7 (33 HSPs)
chr7 (20-218)||(7494557-7494755)
chr7 (3-313)||(21471546-21471858)
chr7 (6-208)||(20470867-20471070)
chr7 (3-125)||(29544458-29544580)
chr7 (3-124)||(7142038-7142159)
chr7 (3-123)||(22067860-22067980)
chr7 (3-125)||(23124840-23124961)
chr7 (3-123)||(9066073-9066193)
chr7 (80-280)||(9761537-9761735)
chr7 (3-76)||(1255267-1255340)
chr7 (4-108)||(7815278-7815383)
chr7 (6-108)||(20446194-20446297)
chr7 (15-96)||(9385456-9385537)
chr7 (3-120)||(21545853-21545969)
chr7 (3-77)||(315172-315246)
chr7 (64-205)||(16536689-16536829)
chr7 (64-205)||(16628833-16628973)
chr7 (25-125)||(18496504-18496604)
chr7 (129-205)||(1074327-1074403)
chr7 (64-200)||(16577387-16577522)
chr7 (64-200)||(16588140-16588275)
chr7 (66-126)||(2353357-2353417)
chr7 (3-87)||(2632490-2632574)
chr7 (14-124)||(28952004-28952114)
chr7 (3-52)||(1074464-1074513)
chr7 (65-126)||(19140090-19140151)
chr7 (65-126)||(20739489-20739550)
chr7 (130-205)||(7956044-7956119)
chr7 (3-93)||(7956152-7956242)
chr7 (3-48)||(20461701-20461746)
chr7 (65-120)||(4092616-4092671)
chr7 (10-50)||(4828805-4828845)
chr7 (15-123)||(12358827-12358935)
[»] chr3 (26 HSPs)
chr3 (6-214)||(13911115-13911323)
chr3 (8-217)||(21017723-21017933)
chr3 (10-286)||(11520916-11521194)
chr3 (3-205)||(8402604-8402806)
chr3 (3-123)||(1475334-1475454)
chr3 (3-102)||(33914616-33914715)
chr3 (21-125)||(25919536-25919640)
chr3 (6-125)||(12409398-12409516)
chr3 (3-123)||(12573231-12573351)
chr3 (3-123)||(13549695-13549815)
chr3 (6-123)||(19219268-19219385)
chr3 (24-118)||(16970186-16970280)
chr3 (6-96)||(10341764-10341853)
chr3 (3-124)||(25883043-25883164)
chr3 (8-120)||(21829191-21829303)
chr3 (129-203)||(5632670-5632744)
chr3 (36-126)||(17637041-17637131)
chr3 (3-48)||(18065832-18065877)
chr3 (7-87)||(4775765-4775845)
chr3 (29-96)||(10303428-10303495)
chr3 (6-87)||(4780744-4780824)
chr3 (3-49)||(2729672-2729718)
chr3 (6-52)||(19263955-19264001)
chr3 (3-52)||(23007119-23007168)
chr3 (64-125)||(23909247-23909308)
chr3 (8-52)||(26387903-26387947)
[»] chr1 (23 HSPs)
chr1 (10-210)||(23223265-23223465)
chr1 (2-287)||(21451869-21452155)
chr1 (3-309)||(30675235-30675545)
chr1 (3-120)||(26657420-26657537)
chr1 (8-115)||(12810271-12810378)
chr1 (3-118)||(50047127-50047242)
chr1 (3-124)||(12423968-12424089)
chr1 (4-124)||(11770049-11770169)
chr1 (6-124)||(8247714-8247832)
chr1 (3-109)||(25266399-25266504)
chr1 (8-124)||(25730630-25730746)
chr1 (15-96)||(23519821-23519902)
chr1 (10-87)||(24903356-24903433)
chr1 (26-205)||(15298946-15299125)
chr1 (17-109)||(18301071-18301165)
chr1 (3-108)||(30781715-30781821)
chr1 (61-203)||(31313413-31313555)
chr1 (3-110)||(34381662-34381769)
chr1 (3-125)||(26101996-26102118)
chr1 (54-126)||(25777936-25778008)
chr1 (9-52)||(25494539-25494582)
chr1 (3-52)||(21550933-21550982)
chr1 (8-121)||(25373729-25373842)
[»] scaffold0282 (1 HSPs)
scaffold0282 (3-233)||(22599-22829)
[»] chr6 (19 HSPs)
chr6 (3-200)||(16527763-16527951)
chr6 (5-126)||(30355264-30355384)
chr6 (3-87)||(13759505-13759589)
chr6 (15-203)||(12972450-12972638)
chr6 (41-125)||(15576254-15576338)
chr6 (5-121)||(15574868-15574983)
chr6 (9-121)||(15998454-15998566)
chr6 (24-124)||(14924492-14924592)
chr6 (61-203)||(1755664-1755806)
chr6 (3-122)||(17860502-17860617)
chr6 (168-313)||(15574692-15574839)
chr6 (10-101)||(16387309-16387400)
chr6 (179-218)||(17860642-17860681)
chr6 (3-102)||(26512831-26512930)
chr6 (3-102)||(26517947-26518046)
chr6 (23-121)||(20495867-20495965)
chr6 (8-126)||(22262289-22262406)
chr6 (18-87)||(32930541-32930610)
chr6 (84-126)||(12974276-12974318)
[»] scaffold0171 (2 HSPs)
scaffold0171 (5-123)||(6137-6255)
scaffold0171 (3-125)||(21336-21458)
[»] scaffold0386 (2 HSPs)
scaffold0386 (2-121)||(8762-8881)
scaffold0386 (11-117)||(13133-13239)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-124)||(446945-447054)
[»] scaffold0188 (1 HSPs)
scaffold0188 (16-123)||(27021-27128)
[»] scaffold0185 (1 HSPs)
scaffold0185 (3-231)||(1278-1504)
[»] scaffold0043 (1 HSPs)
scaffold0043 (8-51)||(58758-58801)
[»] scaffold0190 (1 HSPs)
scaffold0190 (16-121)||(11764-11869)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 3 - 313
Target Start/End: Original strand, 28901394 - 28901704
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  28901394 tcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtattcaaatgcaaagaaaagtattaaaagcatag 28901493  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28901494 ccaaaaatttcatatgatgctccaatatcacaactagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 28901593  T
Q  203 taaagaatgaaacatatctttctggagattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaacaagct 302  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || | |||||||||    
T  28901594 taaagaatgaaacatatctttctagagattttctaagattgtcattcctctcactatcatacttgactagcttaccacatacatgcaactagaacaagct 28901693  T
Q  303 tagagaagata 313  Q
    |||||||||||    
T  28901694 tagagaagata 28901704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 22894584 - 22894818
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactc----ctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagc 98  Q
    ||||||| |||||||||||||||| |||||||||||||||||||     ||||||||||||||||||||| |||||||||| |||||||||||||||| |    
T  22894584 tcgagtgtaaagaatacaatatgtacctcaaaccattgacaacttagttctctatctctcaacttatttggcttcaaatgcgaagaaaagtactaaaaac 22894683  T
Q  99 atagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatg 198  Q
    ||| | |||||| ||||||||||||| |  ||||||| |  |||||||||  ||  ||||| |||||| |||||| ||||||||| ||| ||||||| ||    
T  22894684 atacctaaaaatgtcatatgatgctctgtcatcacaatctcaaacttaaactgtcccttgtcctcaagaaacacaatagcaagaaattataatttacgtg 22894783  T
Q  199 aatttaaagaatgaaacatatctttctggagattt 233  Q
    |||||||| ||||||||||| ||||| | ||||||    
T  22894784 aatttaaataatgaaacatacctttccgaagattt 22894818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 24120285 - 24120085
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| |||||||||| ||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||| |||||    
T  24120285 aaaaaaatacaatatattcctcaaaccgttgacaactcctctaactctcatcttatttctcttcaaatgcaaagaaaagtactaaaaacatagcaaaaaa 24120186  T
Q  110 tttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaa 209  Q
    | |||||||||| | ||  |||||||||   ||  ||||  ||||||||| ||||| ||||||| |||||| ||||||| ||||||||||||||||||||    
T  24120185 tatcatatgatgattcgtcatcacaacccccaaaataaaatgttgcttgtcctcaatcaacacaatagcaataagttaggatttacatgaatttaaagaa 24120086  T
Q  210 t 210  Q
    |    
T  24120085 t 24120085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 16052331 - 16052538
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| | || ||||||||  ||||||||||||||||||||||| ||||||  ||||||||| ||||||||||| ||||||||||||| |||||    
T  16052331 tcgagtgaaaacattaaaatatgttattcaaaccattgacaactcctctaactctcattttatttgtcctcaaatgcaaataaaagtactaaaaacatag 16052430  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    |||||||| |||||||||||||||  |||||||||  |||||||||   | | |||| ||   ||| |||| ||||||||||||||||||||||||||||    
T  16052431 ccaaaaatatcatatgatgctccgtcatcacaaccctaaacttaaactctcgtttgtccttttgcagcacaatagcaagaagttagaatttacatgaatt 16052530  T
Q  203 taaagaat 210  Q
    ||||||||    
T  16052531 taaagaat 16052538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 12956550 - 12956431
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  12956550 tcgagtgaaaacaatacaatattttcctcaaaccattgacaactcctctaactctcatcttatttatcttcaaatgcaaagaaaagtactaaaaacatag 12956451  T
Q  103 ccaaaaatttcatatgatgc 122  Q
     ||||||| ||| |||||||    
T  12956450 acaaaaatatcacatgatgc 12956431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 14977168 - 14977280
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |||||| |||||  |||||    
T  14977168 aaaacaatacaatatgttcctcaaaccattgacaactcctctaactctcatcttatttgtcttaaaatgcaaagaaaagtgctaaaaacatagttaaaaa 14977267  T
Q  110 tttcatatgatgc 122  Q
    | |||||||||||    
T  14977268 tatcatatgatgc 14977280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 6358759 - 6358645
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||    
T  6358759 tcgattgaaaacaatacaatatgtttcccaaaccattaacaactcctctatctctcaacttatatgtcttcaaatgcaaataaaagtactaaaaacatag 6358660  T
Q  103 ccaaaaatttcatat 117  Q
    || ||||| ||||||    
T  6358659 cccaaaatgtcatat 6358645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 5570195 - 5570424
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaag----- 97  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||  |  ||||| ||||||| |||||||||||||| ||||  |  |||||         
T  5570195 tcgagtgaaaacaatacaatatgttcctcaaagtattgacaactccttcaaatctcatcttatttttcttcaaatgcaaaaaaaaaaaaaaaaagttgaa 5570294  T
Q  98 ---catagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaattta 194  Q
       ||||| ||||| | ||||||||||||||| ||||||||||  |||||||||| ||||||||| ||||| ||||||| ||  ||||||||| | ||||    
T  5570295 aaacatagtcaaaa-tatcatatgatgctccgttatcacaaccccaaacttaaattgttgcttgtactcaaacaacacaataataagaagttatatttta 5570393  T
Q  195 catgaatttaaagaat-gaaacatatctttc 224  Q
    |||||||||||||||| |||||||| |||||    
T  5570394 catgaatttaaagaatagaaacatacctttc 5570424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 11310260 - 11310379
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||||| || | |||||||| || ||||||||||||| |  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||     
T  11310260 gagtgaaaacaaaaaaatatgtttcttaaaccattgacaatttttctatctctcaacttatttttcttcaaatgcaaagataagtactaaaaacatagca 11310359  T
Q  105 aaaaatttcatatgatgctc 124  Q
    |||||| |||||||||||||    
T  11310360 aaaaatatcatatgatgctc 11310379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 16054355 - 16054234
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| ||||||| |||||||| ||| ||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||  ||||    
T  16054355 tcgagtgaaaacaatacaaaatgttccttaaatcattgacaactcctctaactcttatcttatttgtcttcaaatgcaaagaaaaagtactaaagacata 16054256  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    ||| ||||| |||||||||||||    
T  16054255 gcc-aaaatgtcatatgatgctc 16054234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 32239341 - 32239229
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| ||||||||||||| ||||||||||||||||||||||||  | | | ||||| | |||||||||| |||||||||| |||||| ||||||||||||    
T  32239341 aaaacaatacaatatgttactcaaaccattgacaactcctctaattattatcttatctatcttcaaatgtaaagaaaagtgctaaaaacatagccaaaaa 32239242  T
Q  110 tttcatatgatgc 122  Q
    | ||||| |||||    
T  32239241 tatcatacgatgc 32239229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 13081991 - 13082090
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| | |||||  |||| |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  13081991 tcgagtgaaaacactacaacgtgtttctcaaatcattgacaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacata 13082090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 29291809 - 29291629
Alignment:
Q  26 ttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    |||||||||||||||| ||||||||||| |  |  || ||||| ||||||||| ||||||||  || |||| ||||||| ||||| |||||||||| |||    
T  29291809 ttcctcaaaccattgataactcctctatatgacttctaatttgccttcaaatgaaaagaaaataacaaaaaacatagcctaaaatatcatatgatgttcc 29291710  T
Q  126 gatatcacaaccagaaacttaaatcgttgcttgttctc--aagcaacacagtagcaagaagttagaatttacatgaattta 204  Q
    |  |||| ||||  |||||||||||||||||| | |||  || ||||| | || ||| ||||||||| |||||||||||||    
T  29291709 gtaatcataacctcaaacttaaatcgttgcttatcctcaaaatcaacaaaatatcaaaaagttagaacttacatgaattta 29291629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 29047373 - 29047491
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||||||| |||||||   ||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||| |  |||    
T  29047373 tcgagtgaaaacaatacaatgtgttcct---accattgacaactcctctaactctcatcttatttgttttcaaatgcaaagaaaaagtactaataatata 29047469  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    ||| ||| | |||||||||||||    
T  29047470 gcc-aaattatcatatgatgctc 29047491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 10867044 - 10866849
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| ||||||| || ||||||||||||||||||||| |||||  |  |  |||||||| |||| ||| |||||||||  ||||||| |||| | |||    
T  10867044 tgaaaacaatacaaaatattcctcaaaccattgacaactactctaaatgacctcttatttgccttcgaattcaaagaaaataactaaaatcataccaaaa 10866945  T
Q  108 aatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
    ||| |||||||||| |||   |||||||||  ||| ||||| | ||| |||| ||||||| ||| | |||||| ||| |||||||| |||||||||    
T  10866944 aatatcatatgatgttccatcatcacaaccccaaaattaaacctttgtttgtcctcaagctacaaaatagcaaaaagatagaattttcatgaattt 10866849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 28902150 - 28902029
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtact-aaaagcata 101  Q
    |||| |||||| ||||||||||||| ||||||||||| | ||||||||||||| ||| |||| ||| ||  ||||||||| ||||||||| |||| ||||    
T  28902150 tcgaatgaaaacaatacaatatgtttctcaaaccattaataactcctctatctatcatcttacttgcctataaatgcaaataaaagtactaaaaaacata 28902051  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    |||  ||||||||||||||||||    
T  28902050 gcc-gaaatttcatatgatgctc 28902029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13530164 - 13530281
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||  |  |  ||||||||||||||| ||||||||| |  ||||||| ||||||| ||    
T  13530164 tgaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaa 13530263  T
Q  108 aatttcatatgatgctcc 125  Q
    ||  ||||||||||||||    
T  13530264 aacatcatatgatgctcc 13530281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 13619703 - 13619820
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| ||||||| |||||||||||||||| |||| ||||||||  |  |  ||||||||||||||| ||||||||| |  ||||||| ||||||| ||    
T  13619703 tgaaaacaatacaaaatgttcctcaaaccatcgacatctcctctaaatgacctcttatttgtcttcaattgcaaagaatataactaaaaacatagcctaa 13619802  T
Q  108 aatttcatatgatgctcc 125  Q
    ||  ||||||||||||||    
T  13619803 aacatcatatgatgctcc 13619820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 26882469 - 26882365
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||||| |||| |||| ||||||||| |||||||| ||  |||||  |||||||||||| | ||| ||| ||||||||||||| ||||    
T  26882469 tcgagtgaaaacaatacattatgctccttaaaccattggcaactcctttaaatctcattttatttgtcttcgattgcgaagaaaaagtactaaaaacata 26882370  T
Q  102 gccaa 106  Q
    |||||    
T  26882369 gccaa 26882365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 125
Target Start/End: Original strand, 28252468 - 28252557
Alignment:
Q  36 cattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    |||||||| ||| |||| |||||| |||||||||||| |||| | || ||||||| ||||| |||| | |||||| ||||||||||||||    
T  28252468 cattgacatctcttctaactctcatcttatttgtctttaaatacgaataaaagtattaaaaacataacaaaaaatatcatatgatgctcc 28252557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 12774955 - 12775019
Alignment:
Q  61 cttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    ||||||||||||||||||| || ||||  ||||||| || |||||||| | ||||||||||||||    
T  12774955 cttatttgtcttcaaatgctaaaaaaataactaaaaacaaagccaaaagtatcatatgatgctcc 12775019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 30543763 - 30543711
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcata 116  Q
    ||||||||||||||||||| |||| |||||||| |||||| |||||| |||||    
T  30543763 atttgtcttcaaatgcaaaaaaaaatactaaaaacatagctaaaaatatcata 30543711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 24932386 - 24932452
Alignment:
Q  140 aaacttaaatcgttgcttgttct-caagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    ||||||||||||||| || || | ||||| ||| | ||||||||| |||||||||||||||||||||    
T  24932386 aaacttaaatcgttgattttttttcaagccacaaaatagcaagaaattagaatttacatgaatttaa 24932452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 27097860 - 27097904
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||||| ||| ||| |||||||||||||||||||||| |||||||    
T  27097860 tgaaaacaatgcaacatgttcctcaaaccattgacaattcctcta 27097904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 28278480 - 28278785
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| |||||| ||||||| |||||||||||| || ||||||| |||||  |||||||| ||||||||||||||||||||||||||| |||||| |    
T  28278480 agtgaaaataatacactatgttcttcaaaccattgagaaatcctctaactctcttcttatttgccttcaaatgcaaagaaaagtactaaaa-catagcaa 28278578  T
Q  106 aaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    ||||| ||||||||||||| |  |||||||||  |||||||||  ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  28278579 aaaatatcatatgatgctctgtcatcacaacccaaaacttaaagtgttgcttgtcctcaagcaacacaatagcaagaagttagaatttacatgaatttaa 28278678  T
Q  206 agaatgaaacatatctttctggagattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaacaagcttag 305  Q
    | |||  | |||| |||||| ||||||| || | ||||||||| ||  |||||||| | |||||||| ||||||| |||||| ||  | |||||  ||||    
T  28278679 ataatagagcatacctttctagagatttgctcatattgtcatt-ctcccactatcagatttgactagtttaccacttccatgcaagcgaaacaaagttag 28278777  T
Q  306 agaagata 313  Q
    ||||||||    
T  28278778 agaagata 28278785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 21505193 - 21505316
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||    
T  21505193 tcgagtgaaaacaatacaatatgctcctcaaaccattgacaactactctaactctcatcttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 21505292  T
Q  103 ccaaaaatttcatatgatgctccg 126  Q
    |||||||| |||||||||||||||    
T  21505293 ccaaaaatatcatatgatgctccg 21505316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 32619682 - 32619586
Alignment:
Q  24 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgat 120  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  32619682 tgttcctctaaccattaacaactcctctatctctcaagttatttgtcttcaaatgcaaagaaaagtactaaaaatatagccaaaaatatcatatgat 32619586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 25474096 - 25473977
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa-gtactaaaagcatagc 103  Q
    ||||||||  ||| ||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| ||| |||| ||||||||| ||||||    
T  25474096 gagtgaaaccaattcaatatgttcctcaaacaattgacaactcctctaactctcatcttatttgtcttcaaatgaaaataaaatgtactaaaaacatagc 25473997  T
Q  104 caaaaatttcatatgatgctc 124  Q
    | ||||| |||||||||||||    
T  25473996 c-aaaatgtcatatgatgctc 25473977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 35707861 - 35707743
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagcc 104  Q
    |||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||||||||| ||||| |    
T  35707861 agtgaaaacaatacaacatgtttctcaaaccattgacaacttctctaactctcatcttatttgtcttcaaatacaaagaaaaagtactaaaaacatagtc 35707762  T
Q  105 aaaaatttcatatgatgctc 124  Q
     ||||| |||||||||||||    
T  35707761 -aaaatgtcatatgatgctc 35707743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 30998829 - 30998750
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaa 85  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||    
T  30998829 agtgaaaacaatacaatatgttcctcaaaccattgacaactcatctaactctcatcttatttgtcttcaaaggcaaagaa 30998750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 39730450 - 39730293
Alignment:
Q  61 cttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgtt 160  Q
    ||||||||||||||| |  ||||||||  ||||||| ||||||| ||||| | |||||||||||||  |||||||||  |||||||||  |||  ||||     
T  39730450 cttatttgtcttcaattataaagaaaataactaaaaacatagcctaaaatattatatgatgctccgccatcacaaccccaaacttaaaatgttatttgtc 39730351  T
Q  161 ctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaatgaaacata 218  Q
    ||||||||||| | ||||||||||||| |||||| ||||||||||  | |||||||||    
T  39730350 ctcaagcaacaaaatagcaagaagttataatttatatgaatttaagaattgaaacata 39730293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 120
Target Start/End: Original strand, 19949611 - 19949725
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagcc 104  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||  |||||| ||||||||| ||||| ||||||||||||| |||||      
T  19949611 agtgaaaataatacaatatgttcctcaaactattaacaactcctcaatctctcatgttatttatcttcaaatacaaagaaaaagtactaaaaacatag-a 19949709  T
Q  105 aaaaatttcatatgat 120  Q
    |||||| |||||||||    
T  19949710 aaaaatatcatatgat 19949725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 1733156 - 1733042
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||||||| |||| |||||  ||||||||||||||||| |||||| || ||||||||||||||| ||| ||||||||||||| ||||  | ||    
T  1733156 tgaaaacaatacaatttgtttctcaactcattgacaactcctctaactctcatctcatttgtcttcaaatgaaaaaaaaagtactaaaaacata-actaa 1733058  T
Q  108 aatttcatatgatgct 123  Q
    ||| ||||||||||||    
T  1733057 aatgtcatatgatgct 1733042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 35031763 - 35031701
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttat 65  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  35031763 tcgagtgaaaacaatacaatatgttcctcaaaccattaacaactcctctatctctcatcttat 35031701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 21843056 - 21843139
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaa 86  Q
    |||| |||||| ||||||| |||||||| ||||||||| |||||||||||  |  |||||||||||||||||||||||||||||    
T  21843056 tcgaatgaaaacaatacaacatgttcctaaaaccattggcaactcctctaaattacaacttatttgtcttcaaatgcaaagaaa 21843139  T

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Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 21844683 - 21844766
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaa 86  Q
    |||| |||||| |||| || |||||||| |||||||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  21844683 tcgaatgaaaacaatataacatgttcctaaaaccattgacaactcctctaaattacaacttatttgtcttcaaatgcaaagaaa 21844766  T

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Target: chr2; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 31449955 - 31449824
Alignment:
Q  66 ttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaa 165  Q
    ||||||||||||||||| ||||  ||||||| ||||||  ||||| ||||| ||| ||||   |||||||||  |||||||||  ||||||||| |||||    
T  31449955 ttgtcttcaaatgcaaataaaataactaaaaacatagcttaaaatatcataagatactccatcatcacaaccccaaacttaaactgttgcttgtcctcaa 31449856  T
Q  166 gcaacacagtagcaagaagttagaatttacat 197  Q
    | |||| | ||||||||||| |||||||||||    
T  31449855 gtaacaaattagcaagaagtcagaatttacat 31449824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 17415361 - 17415427
Alignment:
Q  140 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaa 206  Q
    |||||||||||||||||||||||||||||| | | |||| |||||||| ||||||||||||||||||    
T  17415361 aaacttaaatcgttgcttgttctcaagcaataaaatagctagaagttataatttacatgaatttaaa 17415427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 16593804 - 16593890
Alignment:
Q  3 tcgagtgaaaagaatacaatatgt--tcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    ||||||||||| |||| |||||||  || |||||||||||||||||||| || |||| | |||||||||||||||||||||| ||||    
T  16593804 tcgagtgaaaacaatataatatgtgttcatcaaaccattgacaactcctataactctaatcttatttgtcttcaaatgcaaaaaaaa 16593890  T

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Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 31914037 - 31914099
Alignment:
Q  53 tctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcat 115  Q
    |||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||    
T  31914037 tctctcgacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagcaaaaaatgtcat 31914099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 18236356 - 18236479
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| |||| ||  |||| |||||||||||||||||| || ||  |  ||| || |||| ||||||||||||||||||  ||||||| |||||    
T  18236356 tcgaatgaaaacaatataaattgtttctcaaaccattgacaacttctataaattacaatttctttgccttcaaatgcaaagaaaataactaaaaacatag 18236455  T
Q  103 ccaaaaatttcatatgatgctccg 126  Q
    |  ||||| |||||||||||||||    
T  18236456 cataaaatatcatatgatgctccg 18236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 32276574 - 32276769
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| ||| ||| |||||| |||||||||||||| ||||| ||  |  |  |||||||  ||||||||||||||||||  ||||||| |||| ||||||     
T  32276574 aaaacaatgcaaaatgttcttcaaaccattgacatctcctttaaatgacctcttattttccttcaaatgcaaagaaaataactaaaaacatatccaaaag 32276673  T
Q  110 tttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    |  ||||||||| |||   |||||||||  |||||||||  ||| ||||| || | |||||| | || |||||| ||||  |||||||||||||||    
T  32276674 taccatatgatgttccttcatcacaaccccaaacttaaacggtttcttgtccttacgcaacaaaataacaagaacttagggtttacatgaatttaa 32276769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 15829192 - 15829139
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctca 59  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||| ||||||    
T  15829192 agtgaaaacaatacaatgcgttcctcaaaccattgacaactcctctaactctca 15829139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 19541086 - 19540980
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttca 114  Q
    ||||||| | ||||||||||||||| ||||||||| ||| |     || ||||  ||||||||||||||||||  ||||||| ||||| ||||||| |||    
T  19541086 aatacaaaaagttcctcaaaccattaacaactcctatatataaattctaattttccttcaaatgcaaagaaaataactaaaaacataggcaaaaatctca 19540987  T
Q  115 tatgatg 121  Q
    |||||||    
T  19540986 tatgatg 19540980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 17152214 - 17152165
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||| |||||| ||||||| || |||||||||||||||||||||||||||    
T  17152214 tcgaatgaaaataatacaaaatattcctcaaaccattgacaactcctcta 17152165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 22388828 - 22389009
Alignment:
Q  25 gttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatg---atg 121  Q
    ||||||||||  ||||||||||||||||  |  |  || ||||| ||||||||||||||||||   |||||| |||||| |||||  |||||||   ||     
T  22388828 gttcctcaaattattgacaactcctctaattgacttctaatttgccttcaaatgcaaagaaaatatctaaaaacatagctaaaaacatcatatgttaatt 22388927  T
Q  122 ctccgat-atcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
     | | || || ||||||  ||||||| ||||||||||||  ||||| || | | |||||||||||||||||||||||||||||    
T  22388928 attccatcattacaaccccaaacttatatcgttgcttgtcatcaagaaaaaaa-tagcaagaagttagaatttacatgaattt 22389009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 20963725 - 20963784
Alignment:
Q  62 ttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatg 121  Q
    ||||||||||||| |||||||||| |  |||||||  |||||||||||| ||||||||||    
T  20963725 ttatttgtcttcatatgcaaagaagataactaaaaatatagccaaaaatatcatatgatg 20963784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 22510884 - 22510821
Alignment:
Q  140 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
    |||||||||  ||||||||| ||||||| ||| | ||| |||||||| ||||||||||||||||    
T  22510884 aaacttaaactgttgcttgtcctcaagctacaaaatagaaagaagttggaatttacatgaattt 22510821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 27918173 - 27918236
Alignment:
Q  140 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
    |||||||||| |||||||||  |||| ||| ||| ||| ||||||||||||||||| |||||||    
T  27918173 aaacttaaattgttgcttgtcatcaaacaaaacattagtaagaagttagaatttacgtgaattt 27918236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 32 - 313
Target Start/End: Original strand, 1696652 - 1696931
Alignment:
Q  32 aaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatc 131  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||||   |||||||||||| ||||||||||||     |||    
T  1696652 aaaccattgacaactcctatatctctcatcttatttgtcttcaaatgtaaataaaagtactaaat--atagccaaaaatgtcatatgatgctttatcatc 1696749  T
Q  132 acaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaatgaaacatatctttctggagat 231  Q
    ||||||  |||||||||  ||||||| |  ||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| |||||||||| |    
T  1696750 acaacctcaaacttaaactgttgcttatcttcaagcaacacagtagcaagaagttagaatttacatgaatttataaaataaaatatacctttctggaggt 1696849  T
Q  232 tttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaacaagcttagagaagata 313  Q
    || || |||||||||||||| ||||| ||| ||||||||||| |||||| |||||| ||   |||||| |||||||| ||||    
T  1696850 ttgctgagattgtcattcctctcactgtcaaacttgactagcataccacttccatgcaagcagaacaaacttagagaggata 1696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 1676349 - 1676550
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||  |||     
T  1676349 tcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctctatctttcatcttatttgtcttcaaatgtaaagaaaagtacaaaaaatataa 1676448  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    |||||||| |||||||||||| ||  |||||||||  |||||||||  ||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  1676449 ccaaaaatgtcatatgatgcttcgtcatcacaaccccaaacttaaactgttgcatgtcttcaagcaacacagtagcaagaagttagaatttacatgaatt 1676548  T
Q  203 ta 204  Q
    ||    
T  1676549 ta 1676550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 1682877 - 1683078
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| ||||  |||     
T  1682877 tcgaatgaaaacattacaatatgttcctcaaaccattgacaactcctctatctttcatcttatttgtcttcaaatgtaaagaaaagtacaaaaaatataa 1682976  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    |||||||| |||||||||||| ||  |||||||||  |||||||||  ||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  1682977 ccaaaaatgtcatatgatgcttcgtcatcacaaccccaaacttaaactgttgcatgtcttcaagcaacacagtagcaagaagttagaatttacatgaatt 1683076  T
Q  203 ta 204  Q
    ||    
T  1683077 ta 1683078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 18898052 - 18897929
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| || ||    
T  18898052 tcgagtgaaaacaatacaatatgttccttaaaccattgacaaatcatctatctctcaacttatttgtcttcaaatgcaaagaaaagtagtaaaaacacag 18897953  T
Q  103 ccaaaaatttcatatgatgctccg 126  Q
    |||||||| |||||||||| ||||    
T  18897952 ccaaaaatgtcatatgatgatccg 18897929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 5906774 - 5906893
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||||||| ||||||||||||| |||||    
T  5906774 tcgagtgaaaacaatataatatgttcctcaaaccattgacaattcctctaactctcatcttgtttgtcttcaaatgcaaataaaagtactaaaaacatag 5906873  T
Q  103 ccaaaa-atttcatatgatg 121  Q
    | |||| || ||||||||||    
T  5906874 caaaaatatatcatatgatg 5906893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 12111393 - 12111505
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||| |||| | |||||    
T  12111393 aaaaaaatacaatatgttcctcaaaccattgacaactcctctat-tctcatctt-tttgtcttcaaatgcaaataaaagtactaaaaacataacaaaaaa 12111490  T
Q  110 tttcatatgatgctc 124  Q
    | |||||||||||||    
T  12111491 tgtcatatgatgctc 12111505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 25315288 - 25315378
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||    
T  25315288 agtgaaaacaatacaatatgttcctcaaagcattgacaactcctctatctctcatcttatttatcttcaaatgtaaagaaaagtactaaaa 25315378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 9783039 - 9783158
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagc 103  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| || ||||| ||||||||| |||| ||||||||||||| |||||     
T  9783039 gagtgaaaacaatacaatatgttcctcaaactattgacaactcctctaactctcatctcatttgccttcaaatgtaaagaaaaagtactaaaaacatagg 9783138  T
Q  104 caaaaatttcatatgatgctc 124  Q
    | ||||| |||||||||||||    
T  9783139 c-aaaatgtcatatgatgctc 9783158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 15192262 - 15192143
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||||| ||||||||||||||| ||||  ||| |||||||| |  ||||||| ||||||||||||||||||||||||||||||| |||| |||| |     
T  15192262 gagtgaaaacaatacaatatgttccacaaaaaattaacaactcccccgtctctcatcttatttgtcttcaaatgcaaagaaaagtacgaaaaacataaca 15192163  T
Q  105 aaaaatttcatatgatgctc 124  Q
    |||||| |||||||||||||    
T  15192162 aaaaatgtcatatgatgctc 15192143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 10320273 - 10320394
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||||||| |||| | || ||||| ||| |||||||||| |||||||| |||||||| |||||    
T  10320273 tcgagtgaaaagaatacaatatgtttctctaactattaacaactcgtctaccgctaaacttttttatcttcaaatggaaagaaaattactaaaaacatag 10320372  T
Q  103 ccaaaaatttcatatgatgctc 124  Q
    | |||||| |||||||||||||    
T  10320373 cgaaaaatgtcatatgatgctc 10320394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 4953741 - 4953649
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaag 97  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| |||||| || ||||||| ||||||||| ||||||||| |||||||||    
T  4953741 gagtgaaaacaatacaatatgttcctcaaaccattaacaactcctttatctcacatcttatttctcttcaaatacaaagaaaaatactaaaag 4953649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 34864346 - 34864458
Alignment:
Q  4 cgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagc 103  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||| || | | ||||||||||||||||| |||||||||||||||||| |||| |    
T  34864346 cgagtgaaaacaatatgatacgttcctcaaaccattgacaactcctctaacttttatcttatttgtcttcaaatacaaagaaaagtactaaaaacataac 34864445  T
Q  104 caaaaatttcata 116  Q
     |||||| |||||    
T  34864446 aaaaaatatcata 34864458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 27302839 - 27302746
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||| ||||| || |||||    
T  27302839 tcgagtgaaaacaatacaaaatgttcctcaaaccattgacaacttctctatctatcatcatatttgtcttcaaatgcaacgaaaattattaaaa 27302746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 9288266 - 9288149
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||||||| |||||||||||||||||| |||||||||   |  ||||| ||||  ||| | |||||||||||| |||||||| |||| || ||    
T  9288266 tgaaaacaatacaatttgttcctcaaaccattgaaaactcctcttaattacaactaattttcctttatatgcaaagaaaactactaaaaacatatcctaa 9288167  T
Q  108 aatttcatatgatgctcc 125  Q
    ||| ||||||| ||||||    
T  9288166 aatatcatatggtgctcc 9288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 25050141 - 25050226
Alignment:
Q  25 gttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaat 110  Q
    |||||||||||| |||| || | ||||| || ||| ||||||||||||||||| |||| |||| |||||||| |||||||||||||    
T  25050141 gttcctcaaaccgttgataatttctctaactttcatcttatttgtcttcaaatacaaataaaaatactaaaaacatagccaaaaat 25050226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 22119693 - 22119589
Alignment:
Q  17 tacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcata 116  Q
    |||||| |||||||||||||||||||||||||| ||  |  |  || ||||| ||||||||||||||||||  ||||||| ||||||  ||||| |||||    
T  22119693 tacaatttgttcctcaaaccattgacaactcctataaataacttctaatttgccttcaaatgcaaagaaaataactaaaaacatagcataaaatatcata 22119594  T
Q  117 tgatg 121  Q
    |||||    
T  22119593 tgatg 22119589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 47024810 - 47024868
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaac 61  Q
    ||||||||||| |||||||||| ||  ||||||||||||||||| ||||||||||||||    
T  47024810 tcgagtgaaaacaatacaatatatttttcaaaccattgacaactactctatctctcaac 47024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 17339880 - 17339989
Alignment:
Q  16 atacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcat 115  Q
    |||||| ||||||||||| |||| || ||||||||||  | ||  |||||||| ||| ||||| ||| ||||  | ||||| ||||||| ||||| ||||    
T  17339880 atacaaaatgttcctcaatccatggataactcctctaaatgtcctcttatttgcctttaaatgtaaataaaataattaaaaacatagcctaaaatatcat 17339979  T
Q  116 atgatgctcc 125  Q
    ||||||||||    
T  17339980 atgatgctcc 17339989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 16442371 - 16442441
Alignment:
Q  61 cttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatca 132  Q
    ||||||||||||||||||||||| |||  ||||||  ||||||| ||||  |||||||||||| ||||||||    
T  16442371 cttatttgtcttcaaatgcaaag-aaataactaaacacatagccgaaaacatcatatgatgcttcgatatca 16442441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 31859954 - 31860041
Alignment:
Q  23 atgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaat 110  Q
    ||||||||||||| |||||||||| |||||  |  |   |||||| |||||||||||||| ||||  ||||||| |||||||||||||    
T  31859954 atgttcctcaaacaattgacaacttctctaaataaccttttatttttcttcaaatgcaaaaaaaataactaaaaacatagccaaaaat 31860041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 5125629 - 5125581
Alignment:
Q  39 tgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    |||||| |||||||  ||||| |||||||||||||||||||||| ||||    
T  5125629 tgacaattcctctaattctcatcttatttgtcttcaaatgcaaaaaaaa 5125581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 24841814 - 24841512
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  24841814 tcgagtgaaaacaatacaatatgttcctcaaaccattgaaaactcctctatctctaaacttatttgtcttcaaatgcaaagaatagtactaaaaacatag 24841715  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    | |||||| ||||||||||||| |  |||||||||  | || || |  ||||||||| |||||| |||||| || |||||||||||||||||||| |||     
T  24841714 caaaaaatgtcatatgatgctctgtcatcacaaccccatacgtacactgttgcttgtcctcaagaaacacaataacaagaagttagaatttacattaat- 24841616  T
Q  203 taaagaatgaaacatatctttctggagattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaacaagct 302  Q
           | |||||||  || | |||||||| || ||||||| |||| | ||||||||  |||||||||||||||||| |||||| || | ||| |||||    
T  24841615 -------taaaacatacattcccggagatttgctcagattgttattcttctcactatctgacttgactagcttaccacttccatgcaagtagaagaagct 24841523  T
Q  303 tagagaagata 313  Q
    ||| |||||||    
T  24841522 tagggaagata 24841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 17027585 - 17027385
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| ||| |||||||||||||||||| ||||| || |||||| |||||| |||| ||||||| ||||||||||||||||||||||| ||||||||    
T  17027585 agtgaaaacaattcaatatgttcctcaaacccttgaccacgcctctaactctcatcttaattgtctttaaatgcaaagaaaagtactaaaaacatagcca 17027486  T
Q  106 aaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    ||||| ||||||||||||||    ||||||||  |||||||| || |||||| | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  17027485 aaaatgtcatatgatgctccctcgtcacaaccccaaacttaagtcattgcttatcctcaagcaacacattagcaaaaagttagaatttacatgaatttaa 17027386  T
Q  206 a 206  Q
    |    
T  17027385 a 17027385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 17382091 - 17382210
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||  ||||||     
T  17382091 gagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaactctcatcttatttgtcttcaaatgcaaaaaaaagtactaaacacatagca 17382190  T
Q  105 aaaaatttcatatgatgctc 124  Q
    |||||| |||||||||||||    
T  17382191 aaaaatatcatatgatgctc 17382210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 12340071 - 12340187
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| |||||||     
T  12340071 agtgaaaataatataatatgttcctcaaaccattgacaactcctctaactctcaccttatttgtcttcaaatgcaaagaaaa-tactaaaaacatagcc- 12340168  T
Q  106 aaaatttcatatgatgctc 124  Q
    ||||| |||||||||||||    
T  12340169 aaaatgtcatatgatgctc 12340187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 25594749 - 25594867
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||    
T  25594749 agtgaaaacaatacaatatgttcctcaaaccattgagaaatcctctaactctcatcttatttgtcttcaaatgcaaataaaagtactaaaaacatagcca 25594848  T
Q  106 aaaatttcatatgatgctc 124  Q
    |||||   |||||||||||    
T  25594849 aaaataatatatgatgctc 25594867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 169
Target Start/End: Original strand, 11274387 - 11274550
Alignment:
Q  6 agtgaaaagaatacaatatgttc-ctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    |||||||| |||||||||||||  ||||||||||||||||||  ||||||||| | |||||| ||||| |||||||||||||||||||||||  |||||     
T  11274387 agtgaaaacaatacaatatgttttctcaaaccattgacaactgatctatctcttatcttattggtctttaaatgcaaagaaaagtactaaaa-aatagca 11274485  T
Q  105 aaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaa 169  Q
    |||||| ||| ||||||||||   |||||||||  ||||||||| |||||||||| |||||||||    
T  11274486 aaaaatatcaaatgatgctccttcatcacaaccccaaacttaaaccgttgcttgtcctcaagcaa 11274550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 24517411 - 24517317
Alignment:
Q  7 gtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcata 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||| |||| ||||||| ||||    
T  24517411 gtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaattctcatcttatttgtcttcaaatgcaaagcaaagaactaaaaacata 24517317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 30072218 - 30072134
Alignment:
Q  24 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaa 108  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  30072218 tgttcctcaaaccattgacaactcctctaattctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagccaaaa 30072134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 18222554 - 18222447
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||  ||| |||| ||||||||  ||||    
T  18222554 tcgagttaaaacaatacaatatgtttctcaaaccattgacaactcatctaactctcatcttatttgtcttcaaatagaaataaaaatactaaaaatatag 18222455  T
Q  103 ccaaaaat 110  Q
    | ||||||    
T  18222454 ctaaaaat 18222447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 22967901 - 22968019
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||     || |||||||||||| | |||||||||||| |||||||| ||||||| ||    
T  22967901 tgaaaacagtacaatatgttcctcaaaccattcacaactcctctaaaatccatcttatttgtcttaacatgcaaagaaaactactaaaaacatagcctaa 22968000  T
Q  108 aatttcatatgatgctccg 126  Q
    ||| ||||||||| |||||    
T  22968001 aatatcatatgatactccg 22968019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 26330125 - 26330210
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtac 91  Q
    |||||||| |||||||||| ||||| | ||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||||    
T  26330125 agtgaaaacaatacaatatattccttagaccattgacaactactccatctctcaacttatttgtcttacaatgcaaagaaaagtac 26330210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 16622723 - 16622838
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||| || ||||   | |||||||||||||||| ||| |||| |||||||| ||||||     
T  16622723 gagtgaatacaatacaacatgttcctcaaaccattgacaactcctttaactcttttcgtatttgtcttcaaatgtaaa-aaaaatactaaaaacatagct 16622821  T
Q  105 aaaaatttcatatgatg 121  Q
    |||| | ||||||||||    
T  16622822 aaaattatcatatgatg 16622838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 15205704 - 15205585
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaa-gaaaagtactaaaagcata 101  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| ||   |||| ||||||||| || |||||||||  |||| |||||||| ||||    
T  15205704 tcgagtgaaaacaatacaatatgttcctcaaaccactgacaactccttta--actcatcttatttgtatttaaatgcaaataaaaaatactaaaaacata 15205607  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    | | ||||| |||||||||||||    
T  15205606 gtc-aaaatatcatatgatgctc 15205585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 22229862 - 22229764
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtact-aaaagcatagcc 104  Q
    |||||||| |||||||||  ||||| ||||||||| |     |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  22229862 agtgaaaacaatacaatacattccttaaaccattggc-----ctctatctctcatcttatttgtcttcaaatgcaaagaaaagtactaaaaaacatagcc 22229768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 16634107 - 16634001
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatg-caaagaaaagtactaaaagcata 101  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| || | |||||| ||||||| |||| ||| |  ||| ||||||||||||| ||||    
T  16634107 tcgagtgaaaacaatacaatatgtttctcaaaccattgacaactcatccaactctcatcttatttttctttaaacgtaaaaaaaaagtactaaaaacata 16634008  T
Q  102 gccaaaa 108  Q
    | |||||    
T  16634007 gtcaaaa 16634001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 25680657 - 25680563
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaag 97  Q
    ||||||||||| ||||||||||||||||||||||||||| || |||  || |||||| ||| ||||||||||  |  |||||||| |||||||||    
T  25680657 tcgagtgaaaacaatacaatatgttcctcaaaccattgaaaaatccaataactctcatcttttttgtcttcaggtttaaagaaaattactaaaag 25680563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 25075328 - 25075396
Alignment:
Q  40 gacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaa 108  Q
    ||||||||||||| |||| |  |||||||||||||| ||||||||||| |||||||| |||||||||||    
T  25075328 gacaactcctctaactctaatattatttgtcttcaagtgcaaagaaaattactaaaaacatagccaaaa 25075396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 25133297 - 25133365
Alignment:
Q  40 gacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaa 108  Q
    ||||||||||||| |||| |  |||||||||||||| ||||||||||| |||||||| |||||||||||    
T  25133297 gacaactcctctaactctaatattatttgtcttcaagtgcaaagaaaattactaaaaacatagccaaaa 25133365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 11274549 - 11274615
Alignment:
Q  140 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaa 206  Q
    |||||||||  ||| ||||| |||||||||||||||||||||||||| ||| |||||  ||||||||    
T  11274549 aaacttaaactgttacttgtcctcaagcaacacagtagcaagaagtttgaacttacacaaatttaaa 11274615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 26070535 - 26070429
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||| | || |||||||||  ||||||||||||||||  |  |  |||||||| ||| ||||||||||||||  ||||||| |||||    
T  26070535 tcgaatgaaaacaatactaaattttcctcaaatgattgacaactcctctaaatgacctcttatttgccttaaaatgcaaagaaaataactaaaaacatag 26070436  T
Q  103 ccaaaaa 109  Q
    |||||||    
T  26070435 ccaaaaa 26070429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 22754957 - 22754904
Alignment:
Q  55 tctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaa 108  Q
    ||||| |||||||||||| ||||||||||||| ||||||||| |||| ||||||    
T  22754957 tctcatcttatttgtctttaaatgcaaagaaacgtactaaaaacatatccaaaa 22754904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 24410988 - 24411031
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctct 51  Q
    |||||| ||||||| || ||||||||||||||||||||||||||    
T  24410988 tgaaaacaatacaaaattttcctcaaaccattgacaactcctct 24411031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 24846322 - 24846199
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| |||| || || ||||||||||||| || || |||||||  |  |  ||||||||||||||||||||||||||   |||||||  ||||    
T  24846322 tcgaatgaaaaaaatataaaatattcctcaaaccatggaaaaatcctctaaatgacctcttatttgtcttcaaatgcaaagaaagtaactaaaaatatag 24846223  T
Q  103 ccaaaaatttcatatgatgctccg 126  Q
    || ||||  |||||| ||||||||    
T  24846222 cctaaaacatcatatcatgctccg 24846199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 22644054 - 22644112
Alignment:
Q  140 aaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatg 198  Q
    ||||||||| |||||||| | ||||||||||| | | |||||||||| |||||||||||    
T  22644054 aaacttaaaccgttgcttatcctcaagcaacaaaatggcaagaagttggaatttacatg 22644112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 24268616 - 24268574
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaac 45  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  24268616 tcgagtgaaaacaatacaagatgttcctcaaaccatcgacaac 24268574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 24345245 - 24345203
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaac 45  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||    
T  24345245 tcgagtgaaaacaatacaagatgttcctcaaaccatcgacaac 24345203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 20694701 - 20694652
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||| |||||| ||||||| | |||||||||||||||||||| |||||||    
T  20694701 tcgaatgaaaacaatacaaaaagttcctcaaaccattgacaaatcctcta 20694652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 23157847 - 23157891
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||||| ||||| | | ||||||||||||||||||||||||||||    
T  23157847 tgaaaacaataccaaaagttcctcaaaccattgacaactcctcta 23157891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 7494755 - 7494557
Alignment:
Q  20 aatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatga 119  Q
    |||||||||||||||||||| ||||||  | ||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||    
T  7494755 aatatgttcctcaaaccattaacaactattttatctctcaacctgtttgtcttcaagtgcaaagaaaagtactaaaagaatagccaaaaatatcatgtga 7494656  T
Q  120 tgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaatgaaacata 218  Q
    |||||    |||||||||| |||||||||  ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  7494655 tgctcattcatcacaaccacaaacttaaactgttgcttgtcctcaagcaacacaatagcaagaagtcagaatttacatgaatttaaagaatgaaacata 7494557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 21471858 - 21471546
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||| ||||||||| | ||| ||||||||| |||||||  | ||| ||||||||||||||||||||| | ||||||||||||| ||||    
T  21471858 tcgagtgaaaacaatataatatgttcttaaaatcattgacaaatcctctaaatatcatcttatttgtcttcaaatgcaaggaaaaagtactaaaaacata 21471759  T
Q  102 gccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaat 201  Q
     || |||||  |||||||||||| |  |||||||||  |||||||||  |||| |||| ||||||||| ||| |||| |||||||| |||| ||||||||    
T  21471758 acc-aaaatggcatatgatgctctgtcatcacaaccccaaacttaaactgttgattgtcctcaagcaatacaatagctagaagttaaaattaacatgaat 21471660  T
Q  202 tt-aaagaatgaaacatatctttctgga-gattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaacaa 299  Q
    || ||||||| ||||||| ||||| | | | ||| || ||||||||||||||  |||||||| |||||||||||||||||| | |||| || |||| |||    
T  21471659 ttaaaagaataaaacatacctttccgaaggctttgctcagattgtcattcctcccactatcaaacttgactagcttaccaccttcatgcaagtggatcaa 21471560  T
Q  300 gcttagagaagata 313  Q
     |||||||| ||||    
T  21471559 acttagagaggata 21471546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 20470867 - 20471070
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||  | ||| |||||||||||||| ||  ||| ||||||||||||| || |||||    
T  20470867 agtgaaaacaatataatatgttcctcaaaccattgacaactcctctaattatcatcttatttgtcttcacatataaataaaagtactaaaaacaaagcca 20470966  T
Q  106 aaaatttcatatgatgctccgatatcacaaccagaaacttaaatcg-ttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattta 204  Q
    |||| ||||||||||||| ||  |||||||||  |||||||||| | ||| |||| ||||||||||||  ||||||||||||| ||||||||| ||||||    
T  20470967 aaaaattcatatgatgcttcgtcatcacaaccccaaacttaaattgtttgtttgtcctcaagcaacacgatagcaagaagttataatttacataaattta 20471066  T
Q  205 aaga 208  Q
    ||||    
T  20471067 aaga 20471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 29544580 - 29544458
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||| |||||    
T  29544580 tcgagtgaaaacaatacaatatgttcctcaaactattgacaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaattaataaaaacatag 29544481  T
Q  103 ccaaaaatttcatatgatgctcc 125  Q
    |||||||| ||||||||||||||    
T  29544480 ccaaaaatatcatatgatgctcc 29544458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 7142159 - 7142038
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||| | | |||||||||||||||||||| |||||||||||||| || ||||| |||||    
T  7142159 tcgagtgaaagcaataaaatatgttccttaaaccattgacaactcatatctctctcaacttatttgtctttaaatgcaaagaaaactattaaaaacatag 7142060  T
Q  103 ccaaaaatttcatatgatgctc 124  Q
    |||||||| |||||||||||||    
T  7142059 ccaaaaatgtcatatgatgctc 7142038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 22067860 - 22067980
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaa-gaaaagtactaaaagcata 101  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||  |||| |||||||| ||||    
T  22067860 tcgagtgaaaacaatacattatgttcctcaaaccattgacaactcctttaactctcatcttatttgtcttcaaatgcaaataaaaattactaaaaacata 22067959  T
Q  102 gccaaaaatttcatatgatgct 123  Q
    ||| ||||| ||||||||||||    
T  22067960 gcc-aaaatgtcatatgatgct 22067980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 23124961 - 23124840
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||||||||||||||| |||| | ||||||||||||  ||||| |||||||||||||||||| |||| |||||||||||| |||||    
T  23124961 tcgagtgaaaacaatacaatatgttcctcagaccactaacaactcctctaaatctcatcttatttgtcttcaaatgtaaag-aaagtactaaaaacatag 23124863  T
Q  103 ccaaaaatttcatatgatgctcc 125  Q
      |||||| ||| ||||||||||    
T  23124862 taaaaaatgtcagatgatgctcc 23124840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 9066193 - 9066073
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||| ||  ||||    
T  9066193 tcgagtgaaaacaatacaatatgttcctaaaaacattgacaacttctctatctatcaacttatttgtcttcaaattctaacaaaagtactataaatatag 9066094  T
Q  103 ccaaaaatttcatatgatgct 123  Q
      |||||| |||||| |||||    
T  9066093 taaaaaatgtcatataatgct 9066073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 80 - 280
Target Start/End: Original strand, 9761537 - 9761735
Alignment:
Q  80 aaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagca 179  Q
    ||||||||||||||||| | ||||||||| | ||||||||||||| |  |||||||||  ||| |||||| ||||||||| ||||||| | ||| |||||    
T  9761537 aaagaaaagtactaaaaacgtagccaaaa-tgtcatatgatgctctgtcatcacaaccccaaa-ttaaattgttgcttgtcctcaagctagacaatagca 9761634  T
Q  180 agaagttagaatttacatgaatttaaagaatgaaacatatctttctggagattttctaagattgtcattcctgtcactatcatacttgactagcttacca 279  Q
     |||||||||||| ||||| | | ||| | | ||||||| | ||| | ||||||||| ||||| | |||||| ||||||||| ||||||||| |||||||    
T  9761635 tgaagttagaattcacatggactaaaatagtaaaacatagcattccgaagattttctcagatttttattcctctcactatcagacttgactaacttacca 9761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 1255267 - 1255340
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaa 76  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1255267 tcgagtgaaaacaatacaatttattcctcaaaccattgacaactcctctaactctcaacttatttgtcttcaaa 1255340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 7815383 - 7815278
Alignment:
Q  4 cgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaa-agaaaagtactaaaagcatag 102  Q
    |||||||||| ||||||||||||| || ||||||||||||| |||| || |||||| ||||||| ||||||||||||| | ||||||||||||| ||||     
T  7815383 cgagtgaaaaaaatacaatatgtttcttaaaccattgacaagtcctttaactctcatcttatttatcttcaaatgcaacaaaaaagtactaaaaacataa 7815284  T
Q  103 ccaaaa 108  Q
    ||||||    
T  7815283 ccaaaa 7815278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 20446297 - 20446194
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagcc 104  Q
    |||||||| || |||||||||| || |||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||| ||||| ||||||     
T  20446297 agtgaaaacaaaacaatatgtttctgaaaccattgacaactcctctaattctcatcttaattgtcttcaaatgcaaagaaaaagtattaaaaacatagct 20446198  T
Q  105 aaaa 108  Q
    ||||    
T  20446197 aaaa 20446194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 9385537 - 9385456
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    ||||||||| |||| |||||||||| |||||||| |||||||||| |||| |||||||||||||||| ||||||| ||||||    
T  9385537 aatacaataagttcatcaaaccattaacaactccactatctctcatcttaattgtcttcaaatgcaaggaaaagtgctaaaa 9385456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 21545853 - 21545969
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  | ||  | ||| |||  ||||||||||  | ||||||||||||||||| |||||    
T  21545853 tcgagtgaaaacaatacaatatgttcctcaaaccattgacaacttatttaattatcatctt-gttgtcttcaatggaaaagaaaagtactaaaaacatag 21545951  T
Q  103 ccaaaaatttcatatgat 120  Q
     ||||||| |||||||||    
T  21545952 tcaaaaatatcatatgat 21545969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 315246 - 315172
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaat 77  Q
    |||||||| || |||||||||| ||| ||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  315246 tcgagtgacaataatacaatatattcttcaaaccattgacaactcctctaactctcatcttatttttcttcaaat 315172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 16536689 - 16536829
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctc 163  Q
    ||||||||||||||||||||||||  || |||| |||| |  ||||| ||| |||||| |||   |||||||||  |||||||||| |||| |||| |||    
T  16536689 atttgtcttcaaatgcaaagaaaataaccaaaa-cataacttaaaatatcagatgatgttccatcatcacaaccttaaacttaaattgttgtttgtcctc 16536787  T
Q  164 aagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    |||||||| | ||  ||||||||| |||||||||||||||||    
T  16536788 aagcaacaaaataaaaagaagttataatttacatgaatttaa 16536829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 16628973 - 16628833
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctc 163  Q
    ||||||||||||||||||||||||  || |||| |||| |  ||||| ||| |||||| |||   |||||||||  |||||||||| |||| |||| |||    
T  16628973 atttgtcttcaaatgcaaagaaaataaccaaaa-cataacttaaaatatcagatgatgttccatcatcacaaccttaaacttaaattgttgtttgtcctc 16628875  T
Q  164 aagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    |||||||| | ||  ||||||||| |||||||||||||||||    
T  16628874 aagcaacaaaataaaaagaagttataatttacatgaatttaa 16628833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 125
Target Start/End: Complemental strand, 18496604 - 18496504
Alignment:
Q  25 gttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctc 124  Q
    ||||||||||| |||||||||| |||||  |  |||||| |||  |||||||||||||||||| |||||||| ||||||| ||||| ||||||| |||||    
T  18496604 gttcctcaaacaattgacaacttctctaaattgcaacttgttttccttcaaatgcaaagaaaactactaaaaacatagcctaaaatatcatatggtgctc 18496505  T
Q  125 c 125  Q
    |    
T  18496504 c 18496504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 1074403 - 1074327
Alignment:
Q  129 atcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    |||||||||  |||||||||||||||||||| | ||| ||||| | |||||||||| ||||||||| ||||||||||    
T  1074403 atcacaaccctaaacttaaatcgttgcttgtccccaaacaacaaaatagcaagaaggtagaatttaaatgaatttaa 1074327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 16577387 - 16577522
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctc 163  Q
    ||||||||||||||||||||||||   | |||| |||| |  ||||| |||||||||| |||   |||||||||  |||||||||| |||| |||| |||    
T  16577387 atttgtcttcaaatgcaaagaaaatagccaaaa-cataccttaaaatatcatatgatgttccatcatcacaaccttaaacttaaattgttgtttgtcctc 16577485  T
Q  164 aagcaacacagtagcaagaagttagaatttacatgaa 200  Q
    |||||| | | ||  ||||||||||||||||||||||    
T  16577486 aagcaaaaaaataaaaagaagttagaatttacatgaa 16577522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 200
Target Start/End: Complemental strand, 16588275 - 16588140
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctc 163  Q
    ||||||||||||||||||||||||   | |||| |||| |  ||||| |||||||||| |||   |||||||||  |||||||||| |||| |||| |||    
T  16588275 atttgtcttcaaatgcaaagaaaatagccaaaa-cataccttaaaatatcatatgatgttccatcatcacaaccttaaacttaaattgttgtttgtcctc 16588177  T
Q  164 aagcaacacagtagcaagaagttagaatttacatgaa 200  Q
    |||||| | | ||  ||||||||||||||||||||||    
T  16588176 aagcaaaaaaataaaaagaagttagaatttacatgaa 16588140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 2353357 - 2353417
Alignment:
Q  66 ttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    ||||||||||||||||||||||  ||||||| ||||||| ||||| ||||| |||||||||    
T  2353357 ttgtcttcaaatgcaaagaaaacaactaaaaacatagcctaaaatatcatacgatgctccg 2353417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 2632490 - 2632574
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    |||| |||||| |||||||||||||||| ||| |||  |||||||||||| ||||||   |||| ||||| ||||||||||||||    
T  2632490 tcgattgaaaataatacaatatgttcctaaaatcatcaacaactcctctaactctcatactattagtctttaaatgcaaagaaaa 2632574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 28952004 - 28952114
Alignment:
Q  14 gaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttc 113  Q
    ||||| |||||||||||||||||||  ||||||||||||  |      | |||| |||||||||| ||||||||  ||||||||||||||| ||| | ||    
T  28952004 gaataaaatatgttcctcaaaccataaacaactcctctaaataatttttaatttatcttcaaatgtaaagaaaatgactaaaagcatagcctaaagtatc 28952103  T
Q  114 atatgatgctc 124  Q
    |||||||||||    
T  28952104 atatgatgctc 28952114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 1074513 - 1074464
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||| |||||| ||||||||  ||||||||||||||||||||||||||||    
T  1074513 tcgaatgaaaataatacaattggttcctcaaaccattgacaactcctcta 1074464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 19140090 - 19140151
Alignment:
Q  65 tttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||||| | |||||||| ||||    
T  19140090 tttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaatattatatgatgttccg 19140151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 20739489 - 20739550
Alignment:
Q  65 tttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||||| | |||||||| ||||    
T  20739489 tttgtcttcaaatgcaaagaaaataacttaaaacatagccaaaaatattatatgatgttccg 20739550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 7956119 - 7956044
Alignment:
Q  130 tcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    ||||||||  |||||||||||||| ||||| || |||||||| | || ||||| | |||||||||||| |||||||    
T  7956119 tcacaaccccaaacttaaatcgtttcttgtcctgaagcaacaaaatatcaagacggtagaatttacataaatttaa 7956044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 7956242 - 7956152
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtacta 93  Q
    |||| |||||| |||||||  | ||| | |||||||||| ||||||||||  |  ||||||||||  |||||||||||||||||| |||||    
T  7956242 tcgaatgaaaacaatacaaatttttctttaaaccattgataactcctctaaattacaacttattttccttcaaatgcaaagaaaactacta 7956152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 20461701 - 20461746
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcc 48  Q
    |||| |||||| |||||||  |||||||||||||||||||||||||    
T  20461701 tcgaatgaaaacaatacaaattgttcctcaaaccattgacaactcc 20461746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 4092671 - 4092616
Alignment:
Q  65 tttgtcttcaaatgcaaag-aaaagtactaaaagcatagccaaaaatttcatatgat 120  Q
    ||||||||||||||||||| |||||||||||||  |||| ||||||| |||||||||    
T  4092671 tttgtcttcaaatgcaaagaaaaagtactaaaaatatag-caaaaatgtcatatgat 4092616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 4828845 - 4828805
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctc 50  Q
    |||||||||||| | ||||||||||||||||| ||||||||    
T  4828845 aaaagaatacaaaaagttcctcaaaccattgaaaactcctc 4828805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 12358827 - 12358935
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttca 114  Q
    ||||||| || || |||||||  | |||||||||||||| |  | || |||||||||||  ||||||||||||  || |||||||||| | ||||| |||    
T  12358827 aatacaaaatatttctcaaacattggacaactcctctatgtgaccacatatttgtcttcttatgcaaagaaaataacaaaaagcatagtctaaaatatca 12358926  T
Q  115 tatgatgct 123  Q
     ||||||||    
T  12358927 catgatgct 12358935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 214
Target Start/End: Complemental strand, 13911323 - 13911115
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||||| |||||  |    
T  13911323 agtgaaaacaataccatatgttcctcaaaccattgacaactcttctatctctctacttacttgtcttcaaatacaaagaaaattactaaaaacatagaaa 13911224  T
Q  106 aaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
    ||||| |||| |||| |||||  |||||||||  ||||||||| |||||||||| || ||| |||||| |||||| ||||||||||||||||||||||||    
T  13911223 aaaatatcatttgattctccgtcatcacaaccctaaacttaaaccgttgcttgtcctaaagtaacacaatagcaataagttagaatttacatgaatttaa 13911124  T
Q  206 agaatgaaa 214  Q
    |||||||||    
T  13911123 agaatgaaa 13911115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 21017933 - 21017723
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||| |||||||||||||||  |||| ||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| |||| | |||    
T  21017933 tgaaaataatataatatgttcctcaaattattgccaactcctctaactctcatcttatttttcttcaaatgcaaagaaaaatactaaaaacataacaaaa 21017834  T
Q  108 aatt-tcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaa 206  Q
    || | ||||||||||||| | ||||||||||  |||||||||||||||||||| || |||||||||| || ||||||||||||| |||||||||||||||    
T  21017833 aaatatcatatgatgctctgttatcacaacctcaaacttaaatcgttgcttgtccttaagcaacacaataacaagaagttagaaattacatgaatttaaa 21017734  T
Q  207 gaatgaaacat 217  Q
    |||| ||||||    
T  21017733 gaataaaacat 21017723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 11521194 - 11520916
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagccaaaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||| | | |||| ||||||| ||||||||||||| | ||||||| |||||  |||||| |||    
T  11521194 aaaataatacaatatgttcctcaaaccattgacaactcctccaacgctcatcttatttttcttcaaatgcaatgaaaaagtattaaaattatagcc-aaa 11521096  T
Q  109 atttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa-ag 207  Q
    || | ||||||||||| |  ||||||||   ||||||||| |||||||||| ||||| || || | | |  ||||||||||||| || ||||||||| ||    
T  11521095 atgtaatatgatgctctgtcatcacaacgccaaacttaaaccgttgcttgtcctcaaacatcaaaatggtcagaagttagaattcacgtgaatttaagag 11520996  T
Q  208 aatgaaacatatctttctgga-gattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccat 286  Q
    ||| ||||||| |||||   | | ||| || ||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  11520995 aataaaacatacctttccaaaggctttgctcagattgtcattcctcccactatcaaacttgactagcttaccacatccat 11520916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 8402604 - 8402806
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtac-taaaagcata 101  Q
    |||| |||||| |||||||  |||||||||||||||||||||||||||||  |  || |||||||| |||||||||||||| ||| ||| ||||| ||||    
T  8402604 tcgaatgaaaacaatacaaattgttcctcaaaccattgacaactcctctaaattacatcttatttgccttcaaatgcaaagtaaa-tacataaaaacata 8402702  T
Q  102 gccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaat 201  Q
    | | ||||| ||||||||||||| |  |||||||||  |||||||||||||||||| | ||||||||||| | | ||| |||| ||||||||||| ||||    
T  8402703 gtctaaaatatcatatgatgctctgtcatcacaaccccaaacttaaatcgttgcttttcctcaagcaacaaaattgcaggaagatagaatttacaggaat 8402802  T
Q  202 ttaa 205  Q
    ||||    
T  8402803 ttaa 8402806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 1475334 - 1475454
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||| |||||| | |||||||||||||| ||||||||||||| ||||    
T  1475334 tcgagtgaaaataatacaatatattcctcaaaccattgaaaactcctctaactctcatcttattagacttcaaatgcaaagaaaaagtactaaaaacata 1475433  T
Q  102 gccaaaaatttcatatgatgct 123  Q
    ||| ||||| ||||||||||||    
T  1475434 gcc-aaaatgtcatatgatgct 1475454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 33914616 - 33914715
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||||| |||| |||||||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||| |||||    
T  33914616 tcgagtaaaaacaatacaatatgttcctcaaaccgttgacaactcctataactctcatcttatttgtcttgaaatgcaaagaaaagtactaaaaacatag 33914715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 25919536 - 25919640
Alignment:
Q  21 atatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgat 120  Q
    |||||||||||||||||||||||| || |||| |||||| ||||||||||||||||| |||||||| ||||||||| |||| ||| |||| |||||||||    
T  25919536 atatgttcctcaaaccattgacaaatcatctaactctcatcttatttgtcttcaaattcaaagaaatgtactaaaaacataaccagaaatatcatatgat 25919635  T
Q  121 gctcc 125  Q
    |||||    
T  25919636 gctcc 25919640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 12409516 - 12409398
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||| |||||||||||||| |||||||||||||||||| | |||||| ||| |||||| ||||||||| |||| |||||||||||||  |||| |     
T  12409516 agtgaaaataatacaatatgttcttcaaaccattgacaactcttttatctcccaagttatttttcttcaaatacaaataaaagtactaaaaatatagtc- 12409418  T
Q  106 aaaatttcatatgatgctcc 125  Q
    ||||| |||| |||||||||    
T  12409417 aaaatgtcatgtgatgctcc 12409398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 12573351 - 12573231
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||||||    ||||||||||||||||||| || |||| |||||| ||||||||||||| ||||||||| ||||||||||||| ||||    
T  12573351 tcgagtgaaaacaatacaaagcattcctcaaaccattgacaaatcatctaactctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacata 12573252  T
Q  102 gccaaaaatttcatatgatgct 123  Q
     || ||||| ||||||||||||    
T  12573251 acc-aaaatgtcatatgatgct 12573231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 13549815 - 13549695
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||||||    ||||||||||||||||||| || |||| |||||| ||||||||||||| ||||||||| ||||||||||||| ||||    
T  13549815 tcgagtgaaaacaatacaaagcattcctcaaaccattgacaaatcatctaactctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacata 13549716  T
Q  102 gccaaaaatttcatatgatgct 123  Q
     || ||||| ||||||||||||    
T  13549715 acc-aaaatgtcatatgatgct 13549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 123
Target Start/End: Original strand, 19219268 - 19219385
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcca 105  Q
    |||||||  |||| |||||| ||||||||||||||||||||||  || |||||| ||||||| |||||||| |||||||||| |||||||| || ||| |    
T  19219268 agtgaaagtaataaaatatgctcctcaaaccattgacaactccaataactctcatcttatttatcttcaaaagcaaagaaaaatactaaaaacacagcta 19219367  T
Q  106 aaaatttcatatgatgct 123  Q
    ||| | ||||||||||||    
T  19219368 aaagtatcatatgatgct 19219385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 118
Target Start/End: Complemental strand, 16970280 - 16970186
Alignment:
Q  24 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatg 118  Q
    |||||||| |||||| |||||||| | || |||||||||||||||| ||||||| |||||||||| ||||||| ||||| ||||||| |||||||    
T  16970280 tgttcctcgaaccatcgacaactcatataactctcaacttatttgtgttcaaatacaaagaaaagcactaaaaacatagtcaaaaatatcatatg 16970186  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 10341853 - 10341764
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||  || || ||||||||  |||||||||| |||||||||||||||    
T  10341853 agtgaaaacaatacaatttgttcctcaa-ccattgacaactcctctaattcacatcttatttgatttcaaatgcagagaaaagtactaaaa 10341764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 25883164 - 25883043
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| |||| |||||||||||||||  ||||||||||| |||  |||||| ||||||| ||||||||||||| | |||||||||| ||  |||    
T  25883164 tcgagtgaaaacaatataatatgttcctcaaaaaattgacaactcttctgactctcatcttatttttcttcaaatgcaatgaaaaagtactagaaatata 25883065  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    ||| ||| | |||||||||||||    
T  25883064 gcc-aaagtatcatatgatgctc 25883043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 21829191 - 21829303
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||  |  |  |||||||  ||||||||||||| ||||  | |||||  |||| ||||    
T  21829191 tgaaaataatacaaaatgttcctcaaaccattgacaactcctctaaatgacctcttattttccttcaaatgcaaataaaataaataaaaatatagtcaaa 21829290  T
Q  108 aatttcatatgat 120  Q
    ||| |||||||||    
T  21829291 aatatcatatgat 21829303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 5632670 - 5632744
Alignment:
Q  129 atcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
    |||||||||  ||||||||| |||||||||| | ||||||||| | | ||||||||||||||||||||| |||||    
T  5632670 atcacaaccccaaacttaaaccgttgcttgtccccaagcaacaaaatggcaagaagttagaatttacattaattt 5632744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 17637131 - 17637041
Alignment:
Q  36 cattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    |||| |||||||||||   ||| | |||||||||||| || | |||||||||||| || || ||||||||||||| |||||||||||||||    
T  17637131 catttacaactcctcttattcttatcttatttgtctttaattacaaagaaaagtaatataaacatagccaaaaatgtcatatgatgctccg 17637041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 18065877 - 18065832
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcc 48  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  18065877 tcgagtgaaaacaatacaatatgtttctcaaaccattgacaactcc 18065832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 4775765 - 4775845
Alignment:
Q  7 gtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    ||||||| |||| |||||||||| ||||||| | | | ||||||||| ||| | || ||||||||||||||||||||||||    
T  4775765 gtgaaaacaataaaatatgttccacaaaccaataagagctcctctatatcttatctcatttgtcttcaaatgcaaagaaaa 4775845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 10303495 - 10303428
Alignment:
Q  29 ctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    ||||||||||||||||||||||||  || || ||||||||  |||||||| | |||||||||||||||    
T  10303495 ctcaaaccattgacaactcctctaattcacatcttatttgatttcaaatgtagagaaaagtactaaaa 10303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 4780744 - 4780824
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    |||||||| |||||||||||| |||||||||||| | | ||||||||| ||| | || |||||| ||||||| |||||||||    
T  4780744 agtgaaaacaatacaatatgt-cctcaaaccattaagagctcctctatatcttatctcatttgtattcaaatacaaagaaaa 4780824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 2729672 - 2729718
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcct 49  Q
    ||||||||||| |||| |||||||||||  |||||||||||||||||    
T  2729672 tcgagtgaaaacaatataatatgttccttgaaccattgacaactcct 2729718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 19263955 - 19264001
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    ||||| || |||| |||||| ||||||||||||||||||||||||||    
T  19263955 agtgacaacaatataatatgatcctcaaaccattgacaactcctcta 19264001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 23007119 - 23007168
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||| ||||    
T  23007119 tcgagggaaaacaatacaatatattcctcaaatcattgacaactcatcta 23007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 23909247 - 23909308
Alignment:
Q  64 atttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    |||||||||||| |||||||||||  ||||||| ||||| | ||| ||||||||||| ||||    
T  23909247 atttgtcttcaagtgcaaagaaaataactaaaaacatagtctaaagtttcatatgattctcc 23909308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 26387903 - 26387947
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||||||||||||| | ||| |||||||||||||||||| |||||    
T  26387903 tgaaaagaatacaaaacgtttctcaaaccattgacaactactcta 26387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 23223465 - 23223265
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||| |||||||| ||||||||||||||||||||||||||||| ||| || |||| ||||||  ||||||||||||||||||| ||| ||||||||||||    
T  23223465 aaaaaaatacaatgtgttcctcaaaccattgacaactcctctaactcccatcttaattgtctcaaaatgcaaagaaaagtacttaaaacatagccaaaaa 23223366  T
Q  110 tttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaaagaa 209  Q
      |||||||||||||||  |||||||||  |||||||||| ||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||||||    
T  23223365 catcatatgatgctccgtcatcacaaccccaaacttaaattgtttcttgtccttaagcaacacaatagaaagaagttagaatttacatgaatttaaagaa 23223266  T
Q  210 t 210  Q
    |    
T  23223265 t 23223265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 21451869 - 21452155
Alignment:
Q  2 gtcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa-gtactaaaagcat 100  Q
    |||||||||||| |||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  21451869 gtcgagtgaaaataatacaatatgttcct-ataccattgacaactcttctatctctcatcttatttgtcttcaaatgcaaagaaaacgtactaaaaacat 21451967  T
Q  101 agccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaa 200  Q
    |||| ||||| ||||||||||||  |  |||||||||  |||||||||   || ||||| |||||| |||||| |||||||||||||||||| |||| ||    
T  21451968 agcc-aaaatgtcatatgatgctatgtcatcacaaccccaaacttaaactattacttgtcctcaagaaacacaatagcaagaagttagaattcacataaa 21452066  T
Q  201 ttta--aagaatgaaacatatctttctggagattttctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatg 287  Q
    || |  || ||| ||||||| ||||| |  | ||| || ||||| ||||||||  |||||||| |||||||||| ||||||| ||||||    
T  21452067 ttaaataaaaatcaaacatacctttcggaggctttgctcagattttcattcctcccactatcaaacttgactaggttaccacctccatg 21452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 30675545 - 30675235
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatg-caaagaaaagtactaaaagcata 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||  | ||| ||||||||||| ||||||  |||||||||| |||||| ||||    
T  30675545 tcgagtgaaaacaatacaatatgttcctcaaaccattgacaactcctctaattttcatcttatttgtctacaaatgaaaaagaaaagttctaaaaacata 30675446  T
Q  102 gccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaat 201  Q
    || |||||| ||||||||||||| |  ||||||||    ||||||||  ||||||||| ||||||||| ||  ||||||||||||| |||||||||||||    
T  30675445 gcaaaaaatgtcatatgatgctctgtcatcacaacaccgaacttaaacagttgcttgtcctcaagcaaaactatagcaagaagttaaaatttacatgaat 30675346  T
Q  202 tt--aaagaatgaaacatatctttctggagatttt-ctaagattgtcattcctgtcactatcatacttgactagcttaccacatccatgaaaatggaaca 298  Q
    ||  |||||||   ||||| || | || ||||||| || |||||||||||| |  ||| |||| |||| |||| |||||||| || ||| || |||||||    
T  30675345 ttgaaaagaataggacatacctgtttgaagattttgctcagattgtcattcttcccaccatcaaacttaactaacttaccacttctatgcaattggaaca 30675246  T
Q  299 agcttagagaa 309  Q
    | |||| ||||    
T  30675245 aacttatagaa 30675235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 26657537 - 26657420
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  26657537 tcgagtgaaaacaatacattatattcctcaaaccattgacaactcctctatctctcaacatatttgtcttcaaatgcaaagaaaagtaataaaaacatag 26657438  T
Q  103 ccaaaaatttcatatgat 120  Q
     ||||||| |||||||||    
T  26657437 tcaaaaatatcatatgat 26657420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 12810378 - 12810271
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||| |||||  |||    
T  12810378 tgaaaacaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtctttaaatataaagaaaagtactaaaaacatagtaaaa 12810279  T
Q  108 aatttcat 115  Q
    ||| ||||    
T  12810278 aatatcat 12810271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 118
Target Start/End: Complemental strand, 50047242 - 50047127
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||  | ||| ||||||||||||||||||||||||||||||  |||| |||||    
T  50047242 tcgagtgaaaacaatacaatatgtttctcaaatcattgacaactcctctacttttcatcttatttgtcttcaaatgcaaagaaaagtatcaaaaacatag 50047143  T
Q  103 ccaaaaatttcatatg 118  Q
    |||||||| |||||||    
T  50047142 ccaaaaatatcatatg 50047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 12423968 - 12424089
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    ||||||||||| ||||  ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  12423968 tcgagtgaaaacaatatcatatgttcctcaaaccattaacaacgcctctgtctctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacata 12424067  T
Q  102 gccaaaaatttcatatgatgctc 124  Q
    ||| ||||| |||||||||||||    
T  12424068 gcc-aaaatatcatatgatgctc 12424089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 11770049 - 11770169
Alignment:
Q  4 cgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagc 103  Q
    |||||||||| |||||||||||||||| ||||||||||||| | ||||| |||||| ||||||| ||||||||||||||||| |||| ||||| |||||     
T  11770049 cgagtgaaaacaatacaatatgttccttaaaccattgacaaattctctaactctcatcttatttatcttcaaatgcaaagaatagtattaaaaacataga 11770148  T
Q  104 caaaaatttcatatgatgctc 124  Q
    ||||||| |||| ||||||||    
T  11770149 caaaaatatcatgtgatgctc 11770169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 8247714 - 8247832
Alignment:
Q  6 agtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa-gtactaaaagcatagcc 104  Q
    |||||||| |||| |||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||| ||| ||||| ||||| |    
T  8247714 agtgaaaataataaaatatgttcctcaaaccattgatatctcctctaactctcatcttatttgtcttcaaatgcaaagaaaaggtattaaaaacatagtc 8247813  T
Q  105 aaaaatttcatatgatgctc 124  Q
     ||||| |||||||||||||    
T  8247814 -aaaatgtcatatgatgctc 8247832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 25266399 - 25266504
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||||||||||||  ||| ||||||||||||| |||||||||| | ||| | |||||||||||||||||||||||||||||| ||||     
T  25266399 tcgagtgaaaacaatacaatatgtttttcataccattgacaacttctctatctcttatctt-tctgtcttcaaatgcaaagaaaagtactaaaaacataa 25266497  T
Q  103 ccaaaaa 109  Q
    |||||||    
T  25266498 ccaaaaa 25266504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 25730630 - 25730746
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagc-caa 106  Q
    |||||| ||||||||| | ||||||| ||||||||| | |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||  ||    
T  25730630 tgaaaacaatacaatacgctcctcaagccattgacaccccctctaactctcatcttatttgttttcaaatgcaaagaaaagtactaaaa-catagcaaaa 25730728  T
Q  107 aaatttcatatgatgctc 124  Q
    |||| |||||||||||||    
T  25730729 aaatatcatatgatgctc 25730746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 23519821 - 23519902
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaa 96  Q
    ||||||||||||||||||||| ||| ||||||  ||||||||||| | |||||||||||||| |||||||||||||||||||    
T  23519821 aatacaatatgttcctcaaactattaacaacttttctatctctcatcatatttgtcttcaaaagcaaagaaaagtactaaaa 23519902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 24903356 - 24903433
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    |||| |||||||||||||||||||| ||||||||||||| |||  ||||| | |||||||||||||||||||||||||    
T  24903356 aaaaaaatacaatatgttcctcaaatcattgacaactccactaattctcatcatatttgtcttcaaatgcaaagaaaa 24903433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 15298946 - 15299125
Alignment:
Q  26 ttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    |||||||||||||||||||||| | ||  |  |  || ||||| || |||||||||||||||    ||||| |||| || ||||| |||||||||| |||    
T  15298946 ttcctcaaaccattgacaactcttgtaaatgacttctaatttgcctgcaaatgcaaagaaaatatataaaaacataacctaaaatatcatatgatgttcc 15299045  T
Q  126 gatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatttaa 205  Q
       ||||||| |  ||| ||||||||||| || | ||||||||| | | |||||||||||||||||||||||||||||||    
T  15299046 atcatcacaatcgcaaatttaaatcgttgattctcctcaagcaaaaaaatagcaagaagttagaatttacatgaatttaa 15299125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 18301071 - 18301165
Alignment:
Q  17 tacaatatgttcctcaaaccattgacaactcctctatctctca--acttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaa 109  Q
    |||||||| |||||||||||||||||||| ||| || ||||||    || ||||||||||||||||||||||||||| |||| |||||| |||||    
T  18301071 tacaatatattcctcaaaccattgacaacccctataactctcattttttgtttgtcttcaaatgcaaagaaaagtaccaaaaacatagctaaaaa 18301165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 30781821 - 30781715
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcata 101  Q
    |||| |||||| |||||||||| || || |||  ||  |||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||| ||||    
T  30781821 tcgattgaaaacaatacaatatatttctaaaattatcaacaactcctctaactctcatcttatttgtcttcaaatgcaaagaaaaattactaaaaacata 30781722  T
Q  102 gccaaaa 108  Q
    || ||||    
T  30781721 gcaaaaa 30781715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 31313555 - 31313413
Alignment:
Q  61 cttatttgtcttcaaatgcaaagaaaagtactaa-aagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgt 159  Q
    |||||||| ||||||||||||||||||  ||||| || ||| ||| ||| | ||||||||||  ||    ||||||||  |||||||||  |||||||||    
T  31313555 cttatttgccttcaaatgcaaagaaaataactaagaaacatggcctaaattatcatatgatga-ccatcgtcacaaccccaaacttaaactgttgcttgt 31313457  T
Q  160 tctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
     |||| |||||| | ||||||||| |||||||||||||||||||    
T  31313456 cctcaggcaacaaaatagcaagaaattagaatttacatgaattt 31313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 34381769 - 34381662
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| |||| ||||||||| |||||||||| ||||||||||||  |  || |||||||| ||||||||||||| |||| || ||||| ||||     
T  34381769 tcgaatgaaaacaatataatatgttcttcaaaccattaacaactcctctaaattacatcttatttgccttcaaatgcaaataaaactaataaaaacataa 34381670  T
Q  103 ccaaaaat 110  Q
    || |||||    
T  34381669 cctaaaat 34381662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 26102118 - 26101996
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||||| ||| ||||||||||||||| || | |||||  |  |  ||||||||  |||||||||||||||||  ||||||| ||| |    
T  26102118 tcgaatgaaaacaatacaaaatggtcctcaaaccattgataaattctctaaatgacctcttatttgcgttcaaatgcaaagaaaataactaaaaacatcg 26102019  T
Q  103 ccaaaaatttcatatgatgctcc 125  Q
    || ||||| ||||||||||||||    
T  26102018 cctaaaatatcatatgatgctcc 26101996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 25777936 - 25778008
Alignment:
Q  54 ctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    |||||| ||||||| | |||||||||||||||||| ||||| | |||||| |||||| ||||||||| |||||    
T  25777936 ctctcatcttatttattttcaaatgcaaagaaaagcactaagaacatagcaaaaaatatcatatgatactccg 25778008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 25494539 - 25494582
Alignment:
Q  9 gaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  25494539 gaaaacaagacaatatgttcctcaaaccattgacaactcctcta 25494582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 21550933 - 21550982
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctcta 52  Q
    |||| |||||| ||||||| |||||||||||||||| |||||||||||||    
T  21550933 tcgaatgaaaacaatacaaaatgttcctcaaaccatagacaactcctcta 21550982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 25373842 - 25373729
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||||||| |||||||||||  ||||| | ||| ||||  |  ||| ||||||| |||||||||||||||||| ||||||||  |||||| |     
T  25373842 tgaaaacaatacaatttgttcctcaaataattgaaacctcttctaaattacaatttatttgccttcaaatgcaaagaaaactactaaaaatatagcctag 25373743  T
Q  108 aatttcatatgatg 121  Q
    ||| ||| ||||||    
T  25373742 aatatcacatgatg 25373729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 22599 - 22829
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||||||| ||||||| ||| ||||||| | ||||||   |||| |||||||||||||||||| |||||||| |||| |||||    
T  22599 tcgagtgaaaacaatacaatatgttactcaaacaattaacaactcttttatctccacacttgtttgtcttcaaatgcaaataaaagtacaaaaaacatag 22698  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    ||||||||   |||||||| ||    |||||||||  |||||||||  ||||||||  ||||||||||||| ||||||||||||| ||||||||||||||    
T  22699 ccaaaaatggtatatgatggtctatcatcacaaccccaaacttaaagtgttgcttgccctcaagcaacacaatagcaagaagttataatttacatgaatt 22798  T
Q  203 taaagaatgaaacatatctttctggagattt 233  Q
    |||||||||||||||| |||||  |||||||    
T  22799 taaagaatgaaacatacctttccagagattt 22829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 16527951 - 16527763
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| |||| |||||| | |||||||||  ||||||||||||| |||||| ||||||||||||||||      |||||||||||||| |||||    
T  16527951 tcgagtgaaaacaatataatatggtactcaaaccaccgacaactcctctaactctcatcttatttgtcttcaaa------gaaaagtactaaaaacatag 16527858  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaa 200  Q
    |||||||| | ||||||||||| |  |||||||||  ||||||||| || | ||||| |||||||||||   |||||||| |||||||||||| ||||    
T  16527857 ccaaaaatattatatgatgctctgccatcacaaccccaaacttaaaccggttcttgtcctcaagcaaca---tagcaagacgttagaatttacgtgaa 16527763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 30355384 - 30355264
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||||| |||||||||||||  ||||||||||||||||| ||||| |||||| |||||||  ||||||||||||  ||||||||||||| |||||||    
T  30355384 gagtgaaaa-aatacaatatgtttatcaaaccattgacaacttctctaactctcatcttatttaccttcaaatgcaagtaaaagtactaaaaacatagcc 30355286  T
Q  105 aaaaatttcatatgatgctccg 126  Q
    |||||| |||||||||||||||    
T  30355285 aaaaatatcatatgatgctccg 30355264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 13759505 - 13759589
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||| ||||    
T  13759505 tcgagtgaaaacaattcaatatgttcctcaaaccattgacaactcctctaactctcatcttatttatcttcaaatacaaataaaa 13759589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 12972450 - 12972638
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttca 114  Q
    ||||||| || ||||  ||| |||||||||||||||||  |  |  |||| ||| ||||||||||||||||||  ||||||| ||||||||||||| |||    
T  12972450 aatacaaaattttccgtaaaacattgacaactcctctaaatgacctcttagttgccttcaaatgcaaagaaaataactaaaaacatagccaaaaatatca 12972549  T
Q  115 tatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
     |||||| ||    ||||| |||  |||||||||| ||||||| |||| ||||| || | |||||| |||||||||||||||| |||||    
T  12972550 aatgatgttctatcatcactaccccaaacttaaattgttgcttcttctaaagcaccaaaatagcaacaagttagaatttacataaattt 12972638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 15576254 - 15576338
Alignment:
Q  41 acaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctcc 125  Q
    ||||||||||||  ||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  15576254 acaactcctctaattctcatcctatttgtctttaaattcaaagaaaagtactaaaaacatagccaaaaatatcatatgatgctcc 15576338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 15574983 - 15574868
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaag-aaaagtactaaaagcatagc 103  Q
    ||||||||| |||| || ||||||||||||| |||||||| |||||||  ||||| ||||||||||||||||||||||| ||||||||||| |  |||||    
T  15574983 gagtgaaaacaatataacatgttcctcaaac-attgacaattcctctaaatctcatcttatttgtcttcaaatgcaaagaaaaagtactaacaagatagc 15574885  T
Q  104 caaaaatttcatatgatg 121  Q
    | ||||| ||||||||||    
T  15574884 c-aaaatgtcatatgatg 15574868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 15998566 - 15998454
Alignment:
Q  9 gaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa-gtactaaaagcatagccaaa 107  Q
    |||||||||||||||| ||||||||||||| ||  ||||||||| ||||||  | ||||  |||||||||||||||||| |||| |||| ||||||| ||    
T  15998566 gaaaagaatacaatattttcctcaaaccatggaacactcctctaactctcatatcattttccttcaaatgcaaagaaaacgtacaaaaaacatagcc-aa 15998468  T
Q  108 aatttcatatgatg 121  Q
    ||| ||||||||||    
T  15998467 aatgtcatatgatg 15998454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 14924492 - 14924592
Alignment:
Q  24 tgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgct 123  Q
    |||||||||||||||||||||||||||||  |  ||  ||||||| ||||||||||||||||||  ||||||| ||||||| || || ||||||| ||||    
T  14924492 tgttcctcaaaccattgacaactcctctaaattacatattatttgccttcaaatgcaaagaaaataactaaaaacatagcctaatatatcatatggtgct 14924591  T
Q  124 c 124  Q
    |    
T  14924592 c 14924592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 1755664 - 1755806
Alignment:
Q  61 cttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgtt 160  Q
    ||||||||||||||||| |||||||||  ||||||| |||| ||  | || |||||||||||||||  |||||||||  |||||||||   || | |||     
T  1755664 cttatttgtcttcaaattcaaagaaaataactaaaaacataacctgatatatcatatgatgctccgtcatcacaaccccaaacttaaactattacctgtc 1755763  T
Q  161 ctcaagcaacacagtagcaagaagttagaatttacatgaattt 203  Q
    ||| ||||||| | | || |||||||||||| |||||||||||    
T  1755764 ctctagcaacaaaattgcgagaagttagaatctacatgaattt 1755806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 17860502 - 17860617
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||    |||||| || |||||| ||||||    |||||||| ||||     
T  17860502 tcgagtgaaaataatacaaaatgttcctcaaaccattgacaaattctctaactcttttattatttatcatcaaatacaaaga----tactaaaaacataa 17860597  T
Q  103 ccaaaaatttcatatgatgc 122  Q
    |||||||| |||| ||||||    
T  17860598 ccaaaaatgtcatttgatgc 17860617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 313
Target Start/End: Complemental strand, 15574839 - 15574692
Alignment:
Q  168 aacacagtagcaagaagttagaatttacatgaattt-aaagaatgaaacatatctttctgga-gattttctaagattgtcattcctgtcactatcatact 265  Q
    |||||| |||||| ||||||||||| |||||||||| ||||||| ||||||  ||||| ||| | ||| |||| ||| || |||||  |||||||| |||    
T  15574839 aacacaatagcaaaaagttagaattcacatgaatttaaaagaataaaacatgcctttccggaggctttgctaaaattttcgttcctaccactatcaaact 15574740  T
Q  266 tgactagcttaccacatccatgaaaatggaacaagcttagagaagata 313  Q
    ||| |||| |||||| || ||| || |||| ||| |||||||| ||||    
T  15574739 tgagtagcataccacctcaatgcaagtggatcaaacttagagaggata 15574692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 16387309 - 16387400
Alignment:
Q  10 aaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcata 101  Q
    |||| |||||||||  |||||||||||||||||||||| ||||  |  || |||||| |||||||||  ||||||||| |||||||| ||||    
T  16387309 aaaacaatacaataaattcctcaaaccattgacaactcatctaaattacatcttattcgtcttcaaacacaaagaaaactactaaaaacata 16387400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 17860642 - 17860681
Alignment:
Q  179 aagaagttagaatttacatgaatttaaagaatgaaacata 218  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  17860642 aagaagttagaatttacaagaatttaaagaatgaaacata 17860681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 26512831 - 26512930
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||||| ||||| | ||||||||||||||||||||||  |  |  |||||||| ||||||||||||| ||||  ||||||| |||||    
T  26512831 tcgaatgaaaacaatacaaaatgttacacaaaccattgacaactcctctaaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacatag 26512930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 26517947 - 26518046
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||||| ||||| | ||||||||||||||||||||||  |  |  |||||||| ||||||||||||| ||||  ||||||| |||||    
T  26517947 tcgaatgaaaacaatacaaaatgttacacaaaccattgacaactcctctaaatgacctcttatttgccttcaaatgcaaacaaaataactaaaaacatag 26518046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 20495867 - 20495965
Alignment:
Q  23 atgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcatatgatg 121  Q
    ||||||||||||||||||| |||| |||||| |  |  |||| ||| |||||||| ||||||||| |||||||| ||||||| ||  | ||||||||||    
T  20495867 atgttcctcaaaccattgataacttctctatatgacctcttaattgccttcaaatacaaagaaaattactaaaaacatagcctaatttatcatatgatg 20495965  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 22262406 - 22262289
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaa 107  Q
    |||||| |||||||||| || ||||||||||||||||||||||||  |  |  ||||||||||||| ||| |||| |||| |||||| |  | |||| ||    
T  22262406 tgaaaataatacaatatttttctcaaaccattgacaactcctctaaattacttcttatttgtcttcgaatacaaa-aaaactactaagaagaaagcctaa 22262308  T
Q  108 aatttcatatgatgctccg 126  Q
    | | |||||||||||||||    
T  22262307 actatcatatgatgctccg 22262289  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 32930541 - 32930610
Alignment:
Q  18 acaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaa 87  Q
    |||| ||||||| ||||||||||||||||||||||  |  || |||||||| ||||||||||||| ||||    
T  32930541 acaaaatgttccgcaaaccattgacaactcctctaaatgacatcttatttgccttcaaatgcaaaaaaaa 32930610  T

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Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 12974318 - 12974276
Alignment:
Q  84 aaaagtactaaaagcatagccaaaaatttcatatgatgctccg 126  Q
    ||||||||||||| |||||| |||||| |||||||||||||||    
T  12974318 aaaagtactaaaaccatagcaaaaaatatcatatgatgctccg 12974276  T

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Target: scaffold0171 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 6255 - 6137
Alignment:
Q  5 gagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagcc 104  Q
    ||||||||| |||||| |||||||||||||||||||| ||||| | || |||||| ||||||||| || ||||| ||||||||||||||||| |||||||    
T  6255 gagtgaaaataatacattatgttcctcaaaccattgaaaactcatataactctcatcttatttgtgtttaaatggaaagaaaagtactaaaaacatagcc 6156  T
Q  105 aaaaatttcatatgatgct 123  Q
    ||||||  |||||||||||    
T  6155 aaaaatgccatatgatgct 6137  T

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Target: scaffold0171; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 21458 - 21336
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    ||||||||||| ||||||||| |||||||||||| || | | ||| | || ||   | ||||||| |||||||||||||||||||  ||||||| ||||     
T  21458 tcgagtgaaaacaatacaataagttcctcaaaccctttagatctcatataacttaaatcttatttttcttcaaatgcaaagaaaaacactaaaaacataa 21359  T
Q  103 ccaaaaatttcatatgatgctcc 125  Q
      |||||| ||||||||||||||    
T  21358 taaaaaatatcatatgatgctcc 21336  T

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Target: scaffold0386 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 8762 - 8881
Alignment:
Q  2 gtcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcata 101  Q
    |||||||||||| |||||||||   ||||| |||||||||||| ||||||| | |||| ||||||| |||| ||||| ||| |||||||||||||  |||    
T  8762 gtcgagtgaaaacaatacaatacaatcctctaaccattgacaaatcctctaaccctcatcttatttttcttaaaatgaaaataaaagtactaaaaaaata 8861  T
Q  102 gccaaaaatttcatatgatg 121  Q
     |||||||| ||||||||||    
T  8862 accaaaaatatcatatgatg 8881  T

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Target: scaffold0386; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 13133 - 13239
Alignment:
Q  11 aaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaat 110  Q
    ||||||||||||||  ||| ||||||||||| || ||||||| |||||| |||||||||||| | ||| ||| ||||||||||||| |||| | ||||||    
T  13133 aaagaatacaatataatccacaaaccattgaaaaatcctctaactctcatcttatttgtcttaatatgaaaataaaagtactaaaaacataactaaaaat 13232  T
Q  111 ttcatat 117  Q
     ||||||    
T  13233 atcatat 13239  T

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Target: scaffold0002 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 447054 - 446945
Alignment:
Q  15 aatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaa-gaaaagtactaaaagcatagccaaaaatttc 113  Q
    |||||||||||||||| ||| |||  |||| |||||   |||||| |||||||||||||||||| ||| |||||||||||||| ||||| ||||||| ||    
T  447054 aatacaatatgttcctaaaatcatcaacaattcctcagactctcatcttatttgtcttcaaatgtaaaggaaaagtactaaaaacatag-caaaaatatc 446956  T
Q  114 atatgatgctc 124  Q
    |||||||||||    
T  446955 atatgatgctc 446945  T

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Target: scaffold0188 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 27021 - 27128
Alignment:
Q  16 atacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcat 115  Q
    ||||||| || ||||||| |||| |||||||| | || ||   | ||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  27021 atacaatttgctcctcaatccatagacaactcttgtaacttctatcttatttatcttcaaatgcaaagaaaagtactaaaaacatagccgaaaatatcat 27120  T
Q  116 atgatgct 123  Q
     |||||||    
T  27121 gtgatgct 27128  T

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Target: scaffold0185 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 231
Target Start/End: Complemental strand, 1504 - 1278
Alignment:
Q  3 tcgagtgaaaagaatacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatag 102  Q
    |||| |||||| ||||||| ||| ||||||||  ||||||||||||||||  |  |  |||||||  ||| | ||| ||||||||  ||| ||| |||||    
T  1504 tcgaatgaaaacaatacaaaatgctcctcaaaatattgacaactcctctaaatgacctcttattttccttaagatgaaaagaaaataactcaaa-catag 1406  T
Q  103 ccaaaaatttcatatgatgctccgatatcacaaccagaaacttaaatcgttgcttgttctcaagcaacacagtagcaagaagttagaatttacatgaatt 202  Q
    | |||||| |||||||||| |||   ||   ||||  |||| ||||||||||||||| |||||||| || | ||| ||||| ||| ||||||||||||||    
T  1405 caaaaaatatcatatgatgttccatcatggtaaccctaaacataaatcgttgcttgtcctcaagca-caaaatagaaagaaattataatttacatgaatt 1307  T
Q  203 taaagaatgaaacatatctttctggagat 231  Q
    |||  | || |||||| ||||| ||||||    
T  1306 taagaattggaacatacctttcgggagat 1278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 58801 - 58758
Alignment:
Q  8 tgaaaagaatacaatatgttcctcaaaccattgacaactcctct 51  Q
    |||||| ||||||| | |||||||||||||||||||||||||||    
T  58801 tgaaaacaatacaaaaagttcctcaaaccattgacaactcctct 58758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 11764 - 11869
Alignment:
Q  16 atacaatatgttcctcaaaccattgacaactcctctatctctcaacttatttgtcttcaaatgcaaagaaaagtactaaaagcatagccaaaaatttcat 115  Q
    |||||| | |||| ||||| |||||||||||||||||  |  |  ||  |||| ||||||||||||| ||||  ||||||| ||||||| ||||| ||||    
T  11764 atacaaaaagttcatcaaatcattgacaactcctctaaatgacttctattttgccttcaaatgcaaataaaataactaaaaacatagcctaaaatatcat 11863  T
Q  116 atgatg 121  Q
    ||||||    
T  11864 atgatg 11869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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