View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_19 (Length: 262)
Name: NF18329_low_19
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 51728873 - 51729118
Alignment:
| Q |
17 |
atgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctt |
116 |
Q |
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| T |
51728873 |
atgaatcacaaacaagtacttcttacctgtacaaaggtataaggccagaggggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctt |
51728972 |
T |
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| Q |
117 |
tttctttccatcaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaatttgattccttcattacaaaaccaccactttgat |
216 |
Q |
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| T |
51728973 |
tttctttccattaaaaccagttgcaaggatcactacatcggcttccacctcagtgttatcttcaaattcgattccttcattacaaaaccaccactttgat |
51729072 |
T |
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| Q |
217 |
gcttttttaagtagaattttgcctttttccacctctgagaagaaat |
262 |
Q |
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| T |
51729073 |
gcttttttaagtagaattttgcctttttccacctctgagaagaaat |
51729118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 19056891 - 19056734
Alignment:
| Q |
67 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
166 |
Q |
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| T |
19056891 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19056792 |
T |
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| Q |
167 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
224 |
Q |
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| T |
19056791 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19056734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 19188308 - 19188465
Alignment:
| Q |
67 |
gggtactccaacaggctacaaaaaggctctggtaaaatggttttgatctttttctttccatcaaaaccagttgcaaggatcactacatcggcttccacct |
166 |
Q |
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| T |
19188308 |
gggtattccaacaagctagaaaaaggctctggcaaaatggttttgagcttctttttcccatcataaccagttgcaagaagaacaacatcagcatcaattt |
19188407 |
T |
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| Q |
167 |
cagtgttatcttcaaatttgattccttcattacaaaaccaccactttgatgctttttt |
224 |
Q |
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| T |
19188408 |
tagtgttgtcatcaaattcaattcctccattccaaaaacaccactttgatgctctttt |
19188465 |
T |
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