View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_2 (Length: 521)
Name: NF18329_low_2
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 42910375 - 42909918
Alignment:
| Q |
1 |
cataataggtttgggatttcatcactggaagacttatgcagactcaaggttatcctttggcaataacttgcatcacacttcaccaaggagaacatatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910375 |
cataataggtttgggatttcatcactggaagacttatgcagactcaaggttatcctttggcaataacttgcatcacacttcaccaaggagaacatatttt |
42910276 |
T |
|
| Q |
101 |
gttttgtggtgcaaaaaatggaataataattgtcaacatgcttgatattggtttggaacaaggtcctaatttcatgattagagaagacaaatcacttgaa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910275 |
gttttgtggtgcaaaaaatggaacaataattgtcaacatgcttgatattggtttggaacaaggtcctaatttcatgattagagaagacaaatcacttgaa |
42910176 |
T |
|
| Q |
201 |
ttgacaggacacatgtaataaacaacacctaaaacttgtcatttctcaatacttatgatataatagttatgtaaagaagttaattattgtgtataattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42910175 |
ttgacaggacacatgtaataaacaacacctaaaacttgtcatttctca-------------aatagttatgtaaagaagttaattattgtgtataattgt |
42910089 |
T |
|
| Q |
301 |
gagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttctgaagactgcacaatctgcata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910088 |
gagcttgcttttctgtcaactttgcaggggagccattactgcaatggcatctagtcggacatgcctaatatcgtcttctgaagactgcacaatctgcata |
42909989 |
T |
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| Q |
401 |
tgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
471 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42909988 |
tgggatgtgatcggttggacaatcactcgaagattcgatcttcaaaaatgtaatttgaaatttctaactac |
42909918 |
T |
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