View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_21 (Length: 257)
Name: NF18329_low_21
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 38119972 - 38120159
Alignment:
| Q |
42 |
aactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaacgaa |
141 |
Q |
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| T |
38119972 |
aactatgcaaatcctgaagaacgaattccaaaacaaat----------tcatgaacgtttttggtacaaatcaagactaattcatcaaaatcaaaacgaa |
38120061 |
T |
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| Q |
142 |
ctccaatcaatcgcgttcttcttcttcgttcttcaaaagttgagatctgggttacaatgaacaaatcaatttgcctaaaaagtgttaccactggtcaa |
239 |
Q |
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| T |
38120062 |
ctccaatcaatcgcgttcttcttcttcgttcttcaaaaattgagatctgggttacaatgaacaagtgaatttgcctaaaaagtgttaccactggtcaa |
38120159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 2377158 - 2377270
Alignment:
| Q |
39 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaac |
138 |
Q |
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| T |
2377158 |
ttaaactatgcaaatctagaagaacgatttccaaaacaaatgaaaacgaattcattaaagtttttggtacaaatcaaaattaattcatcaaaattaaaac |
2377257 |
T |
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| Q |
139 |
gaactccaatcaa |
151 |
Q |
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| T |
2377258 |
gaactccaatcaa |
2377270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 39 - 205
Target Start/End: Original strand, 1560299 - 1560465
Alignment:
| Q |
39 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacatttttggtacaaatcaagactaattcatcaaaatcaaaac |
138 |
Q |
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| T |
1560299 |
ttaaactatgcaaatcctgaagaacgaattccaaaacaaatcaaaacgaattcatgaacgtttttggtacaaatcaaaactaattcatcaaaatcaaaac |
1560398 |
T |
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| Q |
139 |
gaactccaatcaatcgcgttcttcttcttcgttcttcaaaagttgagatctgggttacaatgaacaa |
205 |
Q |
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| T |
1560399 |
gaactccaatcaatcggattcttcttcttcgttcttcaaaagttgagatatgggttacaaagaacaa |
1560465 |
T |
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