View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_26 (Length: 241)
Name: NF18329_low_26
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 51729112 - 51729337
Alignment:
| Q |
1 |
aagaaattttctggcattatagccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttccaca |
100 |
Q |
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| T |
51729112 |
aagaaattttctggcattatagccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttccaca |
51729211 |
T |
|
| Q |
101 |
gaaggtaggactcaatgaacttcgaaatgccaagcctctattttagattgcacatcaagaaacaattagctatacatttagcagccataacagaatannn |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
51729212 |
gaaggtaggactcaatgaactttgaaatgccaagcctctattttagattgcacatcaagaaacaattagctatacatttagcacctataacagaatattt |
51729311 |
T |
|
| Q |
201 |
nnnngttcaatgctgtattccttact |
226 |
Q |
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|||||||| ||||||||||||| |
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| T |
51729312 |
atttgttcaatgttgtattccttact |
51729337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 19056695 - 19056564
Alignment:
| Q |
8 |
tttctggcattatagccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttccacagaaggta |
107 |
Q |
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| T |
19056695 |
tttctggtgttatagctatttgacaagatgcaaaatcttcctcaaaagggtgttctggtttcaacccatacttctctaatggaagtttccaaagcaagta |
19056596 |
T |
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| Q |
108 |
ggactcaatgaacttcgaaatgccaagcctct |
139 |
Q |
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| T |
19056595 |
ggactctatgaactttgaaatcacaagcctct |
19056564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 19188504 - 19188635
Alignment:
| Q |
8 |
tttctggcattatagccatttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttccacagaaggta |
107 |
Q |
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||||||| ||||||| |||||||| |||||| |||| ||| ||||||||||||||||||| || |||||||||| ||||||| |||||| || | ||| |
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| T |
19188504 |
tttctggtgttatagctatttgacaagatgcaaaatcttcctcaaaagggtgttctggtttcaacccatacttctctaatggaagtttccatagcaagta |
19188603 |
T |
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| Q |
108 |
ggactcaatgaacttcgaaatgccaagcctct |
139 |
Q |
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|||||| |||||||| ||||| ||||||||| |
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| T |
19188604 |
ggactctatgaactttgaaatcacaagcctct |
19188635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 6895696 - 6895797
Alignment:
| Q |
27 |
ttgacatgatgcataatcctccgcaaaagggtgttctggttttaaatcatacttctccaatggaaatttccacagaaggtaggactcaatgaacttcgaa |
126 |
Q |
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|||||| ||||||||||||||| |||| | ||| ||||| || || |||| ||||| ||||||| |||||| || | ||| ||||| |||||||| ||| |
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| T |
6895696 |
ttgacaagatgcataatcctcctcaaatgagtgatctggcttcaatccatatttctctaatggaagtttccaaagcaagtaagactctatgaactttgaa |
6895795 |
T |
|
| Q |
127 |
at |
128 |
Q |
| |
|
|| |
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|
| T |
6895796 |
at |
6895797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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