View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_28 (Length: 237)
Name: NF18329_low_28
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 465789 - 465582
Alignment:
| Q |
17 |
tttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttatgttaaccagcaa |
116 |
Q |
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| T |
465789 |
tttccttgacagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagcacatgctcttttatattaaccagcaa |
465690 |
T |
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| Q |
117 |
ctctgcctcctgcacacacagacaccactcggattagacgtacactgacacggacacataattacattcaattaactcattttctcaaattagggtttat |
216 |
Q |
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| T |
465689 |
ctctgcctcctacacacacagacacctctcggattagacgcacactgacacggacacataattacattcaattaactcattttctcaaattagggtttat |
465590 |
T |
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| Q |
217 |
aaaactac |
224 |
Q |
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|||||||| |
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| T |
465589 |
aaaactac |
465582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 5774482 - 5774547
Alignment:
| Q |
25 |
acagtgtatctctcaagcaaggttttcttctcggtgtcattgagaatctgatgttcaggcacaagc |
90 |
Q |
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| T |
5774482 |
acagtgtatctctcaagtacggttttcttctcattgtcagtcagcagctgatgttctggcacaagc |
5774547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 208
Target Start/End: Complemental strand, 29127696 - 29127665
Alignment:
| Q |
177 |
attacattcaattaactcattttctcaaatta |
208 |
Q |
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| T |
29127696 |
attacattcaattaactcattttctcaaatta |
29127665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 4769318 - 4769356
Alignment:
| Q |
170 |
acacataattacattcaattaactcattttctcaaatta |
208 |
Q |
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| T |
4769318 |
acacatgaatacattcaattaactcattttctcaaatta |
4769356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 50529721 - 50529749
Alignment:
| Q |
180 |
acattcaattaactcattttctcaaatta |
208 |
Q |
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| T |
50529721 |
acattcaattaactcattttctcaaatta |
50529749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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