View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18329_low_3 (Length: 451)

Name: NF18329_low_3
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18329_low_3
NF18329_low_3
[»] scaffold0783 (2 HSPs)
scaffold0783 (215-451)||(5861-6094)
scaffold0783 (112-201)||(6122-6211)
[»] scaffold0006 (5 HSPs)
scaffold0006 (17-201)||(81623-81807)
scaffold0006 (215-378)||(81433-81595)
scaffold0006 (20-192)||(130149-130320)
scaffold0006 (18-65)||(79920-79967)
scaffold0006 (406-434)||(130107-130135)
[»] chr1 (43 HSPs)
chr1 (20-192)||(13601492-13601663)
chr1 (267-394)||(35512909-35513037)
chr1 (246-395)||(38509897-38510047)
chr1 (246-395)||(40094936-40095086)
chr1 (246-310)||(44210994-44211058)
chr1 (27-98)||(13626924-13626995)
chr1 (246-312)||(35927904-35927970)
chr1 (246-395)||(1085492-1085643)
chr1 (240-309)||(49832632-49832698)
chr1 (266-312)||(17622648-17622694)
chr1 (246-312)||(36285661-36285727)
chr1 (256-395)||(41498505-41498646)
chr1 (246-307)||(51303476-51303537)
chr1 (246-341)||(32951375-32951471)
chr1 (246-345)||(33643359-33643459)
chr1 (246-294)||(50744386-50744434)
chr1 (247-395)||(20607311-20607458)
chr1 (246-395)||(12234101-12234251)
chr1 (246-395)||(30010423-30010573)
chr1 (239-293)||(51582065-51582119)
chr1 (250-334)||(7444590-7444675)
chr1 (247-312)||(8529891-8529956)
chr1 (236-293)||(12108086-12108143)
chr1 (269-345)||(13386972-13387049)
chr1 (240-328)||(42230623-42230712)
chr1 (246-306)||(525192-525252)
chr1 (240-395)||(2858935-2859091)
chr1 (246-294)||(41676370-41676418)
chr1 (246-294)||(49946693-49946741)
chr1 (263-395)||(35349469-35349598)
chr1 (246-340)||(51597759-51597854)
chr1 (240-299)||(52707730-52707789)
chr1 (246-312)||(2506630-2506696)
chr1 (260-294)||(20576236-20576270)
chr1 (264-345)||(47071160-47071242)
chr1 (246-390)||(25268355-25268500)
chr1 (246-279)||(26940963-26940996)
chr1 (246-310)||(42742398-42742463)
chr1 (406-434)||(13601450-13601478)
chr1 (246-310)||(27739142-27739206)
chr1 (246-294)||(45585790-45585838)
chr1 (248-296)||(49065548-49065596)
chr1 (265-293)||(52711797-52711825)
[»] scaffold0069 (1 HSPs)
scaffold0069 (17-100)||(390-473)
[»] chr8 (45 HSPs)
chr8 (247-328)||(24243118-24243199)
chr8 (244-395)||(43732776-43732928)
chr8 (246-395)||(12022145-12022296)
chr8 (246-395)||(41103507-41103659)
chr8 (246-392)||(31543078-31543225)
chr8 (261-322)||(5656188-5656249)
chr8 (247-395)||(16024246-16024394)
chr8 (246-364)||(9933332-9933451)
chr8 (246-308)||(38198140-38198202)
chr8 (246-294)||(1026954-1027002)
chr8 (240-395)||(16653034-16653190)
chr8 (267-345)||(29937614-29937693)
chr8 (246-327)||(26167847-26167928)
chr8 (248-341)||(29358397-29358490)
chr8 (246-394)||(30479721-30479870)
chr8 (264-395)||(8815144-8815276)
chr8 (264-312)||(9434386-9434434)
chr8 (240-312)||(20472779-20472851)
chr8 (246-306)||(30581904-30581963)
chr8 (264-312)||(39449413-39449461)
chr8 (246-395)||(40990184-40990337)
chr8 (246-312)||(11575493-11575559)
chr8 (248-294)||(31738516-31738562)
chr8 (246-291)||(4247625-4247670)
chr8 (244-297)||(4775675-4775728)
chr8 (263-308)||(27487098-27487143)
chr8 (246-329)||(6315153-6315237)
chr8 (264-312)||(6453293-6453341)
chr8 (246-294)||(7979231-7979279)
chr8 (264-395)||(30365239-30365371)
chr8 (246-341)||(37923135-37923231)
chr8 (264-312)||(43826441-43826489)
chr8 (263-306)||(22591501-22591544)
chr8 (263-314)||(34552669-34552720)
chr8 (246-281)||(35694873-35694908)
chr8 (246-312)||(11033508-11033574)
chr8 (240-294)||(36308928-36308982)
chr8 (246-292)||(42650443-42650489)
chr8 (247-312)||(27483652-27483717)
chr8 (236-281)||(36166208-36166253)
chr8 (246-294)||(3726960-3727008)
chr8 (240-288)||(4689919-4689967)
chr8 (246-294)||(7503059-7503107)
chr8 (240-312)||(30664446-30664518)
chr8 (264-312)||(34196418-34196466)
[»] chr3 (41 HSPs)
chr3 (246-395)||(34641083-34641231)
chr3 (246-395)||(24560308-24560458)
chr3 (264-345)||(40858674-40858756)
chr3 (246-341)||(651822-651917)
chr3 (240-341)||(37807164-37807267)
chr3 (240-307)||(42772117-42772184)
chr3 (236-307)||(45663236-45663307)
chr3 (246-312)||(16884059-16884124)
chr3 (246-395)||(41110324-41110474)
chr3 (246-294)||(18654705-18654753)
chr3 (240-395)||(26135882-26136038)
chr3 (240-312)||(42699699-42699771)
chr3 (246-392)||(10943620-10943767)
chr3 (246-293)||(54996786-54996833)
chr3 (246-300)||(2387859-2387913)
chr3 (246-395)||(24253813-24253963)
chr3 (246-312)||(27197736-27197802)
chr3 (246-296)||(37237013-37237063)
chr3 (246-312)||(41414169-41414235)
chr3 (246-307)||(44412452-44412513)
chr3 (246-294)||(14898067-14898115)
chr3 (246-294)||(16275810-16275858)
chr3 (246-294)||(27542036-27542084)
chr3 (246-286)||(46204977-46205017)
chr3 (237-296)||(54801926-54801985)
chr3 (246-312)||(220484-220550)
chr3 (240-345)||(17474259-17474365)
chr3 (245-309)||(44302941-44303002)
chr3 (248-309)||(12790465-12790526)
chr3 (246-307)||(21090163-21090224)
chr3 (246-303)||(47989061-47989118)
chr3 (246-303)||(47998348-47998405)
chr3 (246-303)||(48007635-48007692)
chr3 (240-293)||(49815506-49815559)
chr3 (246-341)||(52185107-52185201)
chr3 (246-341)||(37102206-37102301)
chr3 (246-341)||(40463928-40464024)
chr3 (264-312)||(46978536-46978584)
chr3 (270-310)||(48685961-48686001)
chr3 (246-294)||(51819230-51819278)
chr3 (268-312)||(55428492-55428536)
[»] chr7 (39 HSPs)
chr7 (247-395)||(33519140-33519289)
chr7 (246-395)||(40196535-40196685)
chr7 (264-392)||(37620883-37621012)
chr7 (240-395)||(48881561-48881717)
chr7 (263-395)||(30592256-30592389)
chr7 (246-358)||(33655148-33655261)
chr7 (264-395)||(36267556-36267688)
chr7 (246-358)||(23116299-23116413)
chr7 (246-395)||(41496960-41497110)
chr7 (251-308)||(18127333-18127390)
chr7 (247-308)||(20393693-20393754)
chr7 (246-293)||(18063667-18063714)
chr7 (246-341)||(22163167-22163262)
chr7 (246-341)||(22221875-22221970)
chr7 (247-345)||(28074156-28074255)
chr7 (246-305)||(48093984-48094043)
chr7 (246-312)||(3215947-3216013)
chr7 (264-312)||(16833804-16833852)
chr7 (246-392)||(4833537-4833684)
chr7 (264-307)||(12670928-12670971)
chr7 (261-307)||(7791825-7791871)
chr7 (246-300)||(17852962-17853016)
chr7 (262-395)||(18231693-18231827)
chr7 (240-312)||(19261929-19261998)
chr7 (246-312)||(24970252-24970318)
chr7 (246-395)||(34235010-34235160)
chr7 (261-395)||(47390961-47391097)
chr7 (240-312)||(3143565-3143641)
chr7 (240-294)||(13425225-13425279)
chr7 (246-312)||(21857438-21857504)
chr7 (261-307)||(26365874-26365920)
chr7 (246-312)||(29814358-29814424)
chr7 (256-293)||(37562737-37562774)
chr7 (246-342)||(37929869-37929966)
chr7 (246-329)||(10315724-10315808)
chr7 (256-292)||(37417740-37417776)
chr7 (271-307)||(48015323-48015359)
chr7 (246-306)||(48152071-48152130)
chr7 (246-306)||(48663075-48663135)
[»] chr2 (38 HSPs)
chr2 (240-395)||(23748180-23748336)
chr2 (246-395)||(31795772-31795922)
chr2 (246-312)||(35325360-35325426)
chr2 (247-395)||(9631652-9631801)
chr2 (240-396)||(15085701-15085859)
chr2 (246-306)||(20545800-20545860)
chr2 (247-307)||(31928136-31928196)
chr2 (246-294)||(39732834-39732882)
chr2 (261-395)||(36046207-36046342)
chr2 (248-294)||(15224799-15224845)
chr2 (259-395)||(35736295-35736428)
chr2 (246-308)||(45098260-45098322)
chr2 (246-294)||(6721727-6721775)
chr2 (246-294)||(8426976-8427024)
chr2 (246-294)||(37739996-37740044)
chr2 (246-309)||(41778864-41778927)
chr2 (248-294)||(36566956-36567002)
chr2 (246-395)||(45257398-45257548)
chr2 (246-358)||(12751906-12752019)
chr2 (246-307)||(31061450-31061511)
chr2 (246-307)||(33265697-33265758)
chr2 (247-395)||(42813712-42813861)
chr2 (246-290)||(887007-887051)
chr2 (249-293)||(887210-887254)
chr2 (237-305)||(15915813-15915881)
chr2 (246-290)||(16565868-16565912)
chr2 (264-307)||(3094445-3094488)
chr2 (246-296)||(18811419-18811469)
chr2 (256-294)||(42316869-42316907)
chr2 (264-312)||(1052842-1052890)
chr2 (246-294)||(2241501-2241549)
chr2 (246-294)||(12541857-12541905)
chr2 (246-294)||(17379903-17379951)
chr2 (246-290)||(32503250-32503294)
chr2 (246-334)||(34187666-34187757)
chr2 (246-294)||(36347646-36347694)
chr2 (261-309)||(39354264-39354312)
chr2 (246-294)||(39821760-39821808)
[»] chr4 (50 HSPs)
chr4 (240-345)||(4437478-4437584)
chr4 (246-341)||(6891451-6891547)
chr4 (248-383)||(21694905-21695040)
chr4 (264-395)||(37761573-37761705)
chr4 (246-341)||(55510261-55510356)
chr4 (247-312)||(17938194-17938259)
chr4 (264-395)||(54576330-54576462)
chr4 (246-395)||(27735836-27735986)
chr4 (246-300)||(37711234-37711288)
chr4 (246-312)||(47433796-47433861)
chr4 (247-312)||(11842399-11842464)
chr4 (246-346)||(16400891-16400992)
chr4 (246-310)||(5307098-5307162)
chr4 (246-345)||(22186810-22186910)
chr4 (240-312)||(34108314-34108385)
chr4 (246-345)||(43961501-43961601)
chr4 (246-341)||(36151667-36151762)
chr4 (246-341)||(45132559-45132654)
chr4 (246-395)||(54935159-54935310)
chr4 (246-395)||(41174436-41174586)
chr4 (246-395)||(45741981-45742131)
chr4 (246-312)||(46007788-46007854)
chr4 (246-395)||(49735471-49735621)
chr4 (246-294)||(1968464-1968512)
chr4 (246-294)||(5730935-5730983)
chr4 (246-294)||(26167028-26167076)
chr4 (246-345)||(29993824-29993924)
chr4 (246-294)||(35248777-35248825)
chr4 (246-345)||(47846108-47846208)
chr4 (264-307)||(7977588-7977631)
chr4 (247-322)||(8347292-8347367)
chr4 (246-308)||(17182576-17182638)
chr4 (246-395)||(54320525-54320675)
chr4 (240-293)||(18516577-18516630)
chr4 (251-296)||(41227576-41227621)
chr4 (246-294)||(56135840-56135888)
chr4 (250-293)||(29798379-29798422)
chr4 (246-293)||(47694440-47694487)
chr4 (273-312)||(51075215-51075254)
chr4 (264-294)||(54001208-54001238)
chr4 (261-294)||(2917068-2917101)
chr4 (246-307)||(14539363-14539424)
chr4 (248-296)||(22921074-22921123)
chr4 (248-296)||(22970676-22970725)
chr4 (272-312)||(5825013-5825053)
chr4 (240-312)||(9030301-9030373)
chr4 (264-312)||(11089625-11089673)
chr4 (240-296)||(23813186-23813242)
chr4 (250-286)||(28332899-28332935)
chr4 (264-312)||(55080688-55080736)
[»] scaffold0007 (1 HSPs)
scaffold0007 (246-394)||(242307-242456)
[»] scaffold0262 (1 HSPs)
scaffold0262 (246-392)||(16302-16449)
[»] scaffold0012 (1 HSPs)
scaffold0012 (264-394)||(184716-184847)
[»] chr5 (42 HSPs)
chr5 (246-395)||(7544227-7544377)
chr5 (263-364)||(13839762-13839864)
chr5 (246-395)||(33744196-33744346)
chr5 (246-395)||(34980901-34981051)
chr5 (261-312)||(42681559-42681610)
chr5 (246-312)||(10072734-10072800)
chr5 (246-395)||(13634802-13634952)
chr5 (246-395)||(28279479-28279629)
chr5 (240-294)||(4373671-4373725)
chr5 (246-312)||(9856971-9857037)
chr5 (240-306)||(33424895-33424961)
chr5 (240-395)||(37551492-37551646)
chr5 (240-395)||(37654322-37654476)
chr5 (246-294)||(16938570-16938618)
chr5 (245-309)||(18855697-18855761)
chr5 (304-395)||(1657963-1658054)
chr5 (246-395)||(26414984-26415135)
chr5 (272-306)||(2556110-2556144)
chr5 (269-307)||(6597882-6597920)
chr5 (246-312)||(10204667-10204733)
chr5 (240-294)||(29002311-29002365)
chr5 (237-294)||(36392255-36392312)
chr5 (284-395)||(2183943-2184055)
chr5 (267-307)||(10043101-10043141)
chr5 (246-294)||(11756968-11757016)
chr5 (246-294)||(16501895-16501943)
chr5 (246-294)||(17024329-17024377)
chr5 (245-309)||(35244003-35244067)
chr5 (245-312)||(8551505-8551572)
chr5 (261-395)||(37607000-37607135)
chr5 (261-395)||(37779209-37779344)
chr5 (246-312)||(21581038-21581104)
chr5 (247-345)||(27110120-27110218)
chr5 (261-345)||(11437045-11437130)
chr5 (261-293)||(1977638-1977670)
chr5 (248-312)||(2550440-2550503)
chr5 (264-312)||(10043361-10043409)
chr5 (246-290)||(10476119-10476163)
chr5 (260-312)||(26155792-26155844)
chr5 (261-313)||(35133025-35133076)
chr5 (246-393)||(36363123-36363271)
chr5 (264-312)||(40305752-40305800)
[»] scaffold0067 (1 HSPs)
scaffold0067 (246-395)||(39189-39343)
[»] chr6 (35 HSPs)
chr6 (240-395)||(30487309-30487464)
chr6 (246-341)||(31849201-31849297)
chr6 (261-395)||(10818322-10818457)
chr6 (247-296)||(32926737-32926786)
chr6 (246-395)||(33236042-33236191)
chr6 (249-395)||(1300714-1300861)
chr6 (264-311)||(5526832-5526879)
chr6 (246-396)||(26318396-26318547)
chr6 (246-312)||(4097599-4097665)
chr6 (261-311)||(23924944-23924994)
chr6 (257-307)||(30850004-30850054)
chr6 (264-308)||(31799030-31799074)
chr6 (261-300)||(2892942-2892981)
chr6 (240-283)||(16509365-16509408)
chr6 (246-308)||(2892694-2892756)
chr6 (246-312)||(13583810-13583876)
chr6 (246-395)||(16737999-16738149)
chr6 (240-312)||(1395721-1395793)
chr6 (240-312)||(4097322-4097394)
chr6 (264-308)||(6695067-6695111)
chr6 (246-293)||(14515562-14515609)
chr6 (246-364)||(21606878-21606997)
chr6 (246-312)||(1390411-1390476)
chr6 (236-310)||(3023594-3023667)
chr6 (246-296)||(17155447-17155497)
chr6 (247-296)||(32922437-32922486)
chr6 (246-294)||(665946-665994)
chr6 (246-345)||(3841176-3841277)
chr6 (264-312)||(15353472-15353520)
chr6 (264-312)||(15373686-15373734)
chr6 (261-309)||(17842488-17842536)
chr6 (246-294)||(19278143-19278191)
chr6 (246-345)||(25468452-25468552)
chr6 (246-294)||(34176426-34176474)
chr6 (264-312)||(34176658-34176706)
[»] scaffold0095 (1 HSPs)
scaffold0095 (264-312)||(8256-8304)
[»] scaffold0026 (1 HSPs)
scaffold0026 (247-312)||(1484-1549)
[»] scaffold0096 (1 HSPs)
scaffold0096 (246-309)||(6675-6737)
[»] scaffold0071 (1 HSPs)
scaffold0071 (264-307)||(52994-53037)
[»] scaffold0018 (1 HSPs)
scaffold0018 (266-305)||(69301-69340)
[»] scaffold0119 (1 HSPs)
scaffold0119 (246-358)||(37474-37587)


Alignment Details
Target: scaffold0783 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 215 - 451
Target Start/End: Complemental strand, 6094 - 5861
Alignment:
Q  215 aaattacagatcatataatttaatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6094 aaattacagatcatataatttaatattttaaaaaataaatcaagtatgattcaagtattatatgatcatttatcatgttattatttcaattttttaatga 5995  T
Q  315 cattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacacatactcttttgttactagg 414  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  5994 cattttatcgtgtccataatata-aaaagaatagcaatctctcctctcctttcacctctcaaaccctccatccaaacacacatactc--ttgttactagg 5898  T
Q  415 agatccatttttcacaatctatctctgctcctcctca 451  Q
    ||||||||||||||||||||||| ||| |||| ||||    
T  5897 agatccatttttcacaatctatccctggtcctactca 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 6211 - 6122
Alignment:
Q  112 aagaaggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtgtt 201  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6211 aagaaggaccctcggcgtgtatgattaagatacctttctccaatccattctaagtcaacttactcacgaggttcttgtgttccgtgtgtt 6122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 81807 - 81623
Alignment:
Q  17 aagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccattaaactaagaggaagaa 116  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  81807 aagaaggttaacaaaggaatattcatcatcaaatgtcttaataagtttaggtacttggtgaattggtcattttggctagccattgaactaagaggaagaa 81708  T
Q  117 ggaccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtgtt 201  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81707 ggaccctcggtgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgttccgtgtgtt 81623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 81595 - 81433
Alignment:
Q  215 aaattacagatcatataatttaatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81595 aaattacagatcatataatttaatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga 81496  T
Q  315 cattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaac 378  Q
    |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  81495 cattttat-gtgtccatgatataaaaaagaatagcaatccctactctcctttcacctctcaaac 81433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 130320 - 130149
Alignment:
Q  20 aaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccattaaactaagaggaagaagga 119  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||| |||| ||||| ||||||||| |||||||| || | ||| ||||||||||||    
T  130320 aaggttaacaaaggaatattcaccatcaaattcctcaataagtttaggtacttcgtgaaatggtcattt-ggctagcccttgacctatgaggaagaagga 130222  T
Q  120 ccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgtt 192  Q
    || | |||||||| |||||| ||||| |||||||||||||||| ||||||| |||| ||||||||||||||||    
T  130221 ccattggcgtgtacgactaaaatatcattctccaatccattctcagtcaacctactaaccaggttcttgtgtt 130149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 79920 - 79967
Alignment:
Q  18 agaaggttaacaaaggaatattcatcatcaaatgccttaataagttta 65  Q
    |||||||| ||||| ||||||||| |||||||||||| ||||||||||    
T  79920 agaaggttcacaaaagaatattcaccatcaaatgcctcaataagttta 79967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 434
Target Start/End: Complemental strand, 130135 - 130107
Alignment:
Q  406 gttactaggagatccatttttcacaatct 434  Q
    |||||||||||||||||||||||||||||    
T  130135 gttactaggagatccatttttcacaatct 130107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 13601663 - 13601492
Alignment:
Q  20 aaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccattaaactaagaggaagaagga 119  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||||| |||| ||||| ||||||||| |||||||| || | ||| ||||||||||||    
T  13601663 aaggttaacaaaggaatattcaccatcaaattcctcaataagtttaggtacttcgtgaaatggtcattt-ggctagcccttgacctatgaggaagaagga 13601565  T
Q  120 ccctcggcgtgtatgactaagatatctttctccaatccattctaagtcaacttactcaccaggttcttgtgtt 192  Q
    || | |||||||| |||||| ||||| |||||||||||||||| ||||||| |||| ||||||||||||||||    
T  13601564 ccattggcgtgtacgactaaaatatcattctccaatccattctcagtcaacctactaaccaggttcttgtgtt 13601492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 35512909 - 35513037
Alignment:
Q  267 aagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctt 365  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  |||||||||| ||||||| || || || |||||| |||| |    
T  35512909 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataatttaaaaaataaaagtaagccctcccctccct 35513008  T
Q  366 tcacctctcaaaccctccatccaaacaca 394  Q
    || ||||  ||||||||||||||||||||    
T  35513009 tcccctcctaaaccctccatccaaacaca 35513037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 38510047 - 38509897
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt-aaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| ||||||||||||||||| ||| |||||| |||||  || | |||||||| |||||||||| || |||||| |||| |||||| ||    
T  38510047 aaaataaatcaagtgtgattgaagtattatattatcgtttatcgtgttaagatgttaattttttaaaagacatttcatagtgtccgtaatttaaaaatga 38509948  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||  | ||||||||||| ||| ||||  |||||||| ||||||||||||    
T  38509947 aaagtgaaccctcctctcccttcccctcctaaaccctctatccaaacacac 38509897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 40095086 - 40094936
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||| | | | || |||||| || |||||| || |||||| |||| |||||| ||    
T  40095086 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttaatttgttaactttttataaaacatttcatagtgtccgtaatttaaaaatga 40094987  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || |||||| || | ||| ||||  |||||||||||||||||||||    
T  40094986 aaagtaaaccctccccttccttcccctcctaaaccctccatccaaacacac 40094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 44211058 - 44210994
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 310  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  44211058 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttgttattttaatttttta 44210994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 13626924 - 13626995
Alignment:
Q  27 acaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagcca 98  Q
    ||||||||||| |||||||||||||||| ||||||| ||  |||  ||||||||||||||||||||||||||    
T  13626924 acaaaggaataatcatcatcaaatgcctcaataagtctaataacagggtgaattggtcattttggctagcca 13626995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 35927904 - 35927970
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  35927904 aaaataaattaagtatttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaa 35927970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 1085643 - 1085492
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaa-g 343  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||| | ||| ||||||||| |||| | |||||| |  ||||| |||| ||||||| |    
T  1085643 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgctgttagttcaattttctaaaaatcattttctaatgtccgtaatttaaaaaagg 1085544  T
Q  344 aatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    || || ||  ||||| |||| | | ||||  |||||||||||||||||||||    
T  1085543 aaaagtaagtcctcccctccatccccctcctaaaccctccatccaaacacac 1085492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 49832632 - 49832698
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    |||| |||||||||  |||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  49832632 tttttaaaaataaaataagtgtgattgaagtattatat---catttatcatgttattatttcaatttttt 49832698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 17622648 - 17622694
Alignment:
Q  266 gaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||    
T  17622648 gaagtattatatgatcacttatcatgttattaattcaattttttaaa 17622694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 36285727 - 36285661
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  36285727 aaaatatatcaagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 36285661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 395
Target Start/End: Original strand, 41498505 - 41498646
Alignment:
Q  256 aagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatcc 354  Q
    |||| ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || |||||| |||| |||||| ||| || ||  |    
T  41498505 aagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatc 41498604  T
Q  355 ctcctct-cctttcacctctcaaaccctccatccaaacacac 395  Q
    |||| || |||| | ||||  |||| ||||||||||||||||    
T  41498605 ctcccctcccttacccctcctaaactctccatccaaacacac 41498646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 51303537 - 51303476
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||| ||| |||||||||    
T  51303537 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaatttt 51303476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 32951471 - 32951375
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||||||| ||| | || |||||| || |||||| || |||||| |||| ||||||    
T  32951471 aaaataaattaagtgtgattgaagtattatacgatcgtttatcatgttaatatgttaactttttataaaacatttcattgtgtccgtaatttaaaaa 32951375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 33643359 - 33643459
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||||||||||||||||| ||||| |||||| ||||||||| |||| | |||||||   ||| |||||| |||||||||    
T  33643359 aaaataaattaagtgtttttgaagtattatatgatcattcatcatattattaattcaattttctaaaaatcattttaaaatgttcataatttaaaaaaga 33643458  T
Q  345 a 345  Q
    |    
T  33643459 a 33643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 50744434 - 50744386
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  50744434 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgtta 50744386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 20607311 - 20607458
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataat-ataaaaaaga 344  Q
    |||||||| |||| |  ||||||||||||||||| || ||||||||||  |||| ||||||  ||| | ||||||||  |||||||||| | |||||| |    
T  20607311 aaataaattaagtgtttttgaagtattatatgataatatatcatgtta--attt-aattttcaaaaaatcattttataatgtccataattaaaaaaaaaa 20607407  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    |||| || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  20607408 atagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 20607458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 12234101 - 12234251
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| ||||||| |||| |||||||||| ||| |||||| |||  | | ||| | ||| ||||||  | |||||| |||| |||||| ||    
T  12234101 aaaataaatcaagtgtgattgatgtataatatgatcatatattatgttaatatgctaactttataaaaaacatttcgtagtgtccgtaatttaaaaatga 12234200  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | |  || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  12234201 aaactaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 12234251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 30010423 - 30010573
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| || |||||||||||||||||| ||||| |||||| ||| || | | ||| ||| ||||||  | |||||| |||| | |||| ||    
T  30010423 aaaataaattaagtgtggttgaagtattatatgatcgtttataatgttaatatgttaactatttaaaaaacatttcgtagtgtccgtaatttcaaaatga 30010522  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || |||||| |||| ||| |||   |||||||||||||||||||||    
T  30010523 aaagtaaaccctcccctcccttccccttctaaaccctccatccaaacacac 30010573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 51582065 - 51582119
Alignment:
Q  239 attttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||| ||||||||||  ||| |||||||||||||| ||||||||||||||||||    
T  51582065 atttttaaaaataaattcagtgtgattgaagtattacatgatcatttatcatgtt 51582119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 334
Target Start/End: Original strand, 7444590 - 7444675
Alignment:
Q  250 taaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataat 334  Q
    |||| ||||| ||||||||||||||||||||| ||||| |||||| ||| | || |||||||| | |||||||| |||||| ||||    
T  7444590 taaaccaagtgtgattgaagtattatatgatcgtttattatgttaatatgttaactttttaaaaatcattttatagtgtccgtaat 7444675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 8529891 - 8529956
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| |||| ||||||||||||||||||||| |||| ||||||| ||| | || ||||||||    
T  8529891 aaataaattaagtgtgattgaagtattatatgatcgtttaccatgttaatatgttaactttttaaa 8529956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 12108143 - 12108086
Alignment:
Q  236 aatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    |||||||| |||||||||| || | |||||||||||| ||| ||||||||||||||||    
T  12108143 aatatttttaaaaataaattaactgtgattgaagtatcataagatcatttatcatgtt 12108086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 345
Target Start/End: Complemental strand, 13387049 - 13386972
Alignment:
Q  269 gtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||| | | ||||||  ||||||||||  |||||||||    
T  13387049 gtattatatgatcatttatcatgttgttaattcaattttctaaaaatcgttttatgatgtccataattaaaaaaagaa 13386972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 42230623 - 42230712
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtc 328  Q
    |||| |||||||||| |||| ||||||||||||||||||||  ||||| |||||| ||||| || ||| | ||| ||||||||| |||||    
T  42230623 tttttaaaaataaattaagtgtgattgaagtattatatgattgtttattatgttaatattttaactttataaaaaacattttatagtgtc 42230712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 525252 - 525192
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    ||||||||| |||| || |||||||||||||| |||||||||||| || ||| ||||||||    
T  525252 aaaataaattaagtttgtttgaagtattatataatcatttatcatattgttaattcaattt 525192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 395
Target Start/End: Complemental strand, 2859091 - 2858935
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataa 338  Q
    |||| |||||||||| |||| ||||||||||||||||||||  ||||| |||| | ||| | || ||||||||  |||||| || | |||  |||| ||     
T  2859091 ttttcaaaaataaattaagtgtgattgaagtattatatgattgtttataatgtaagtatgttaactttttaaataacatttcatagggtctgtaatttag 2858992  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| || || |||||| |||| ||  ||||  |||||||||||||||||||||    
T  2858991 aaatgaaaagtaaaccctcccctccctttccctcctaaaccctccatccaaacacac 2858935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 41676370 - 41676418
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |||||| |||||||||||||| ||||||||||||    
T  41676370 aaaataaattaagtgtgattgtagtattatatgatcgtttatcatgtta 41676418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 49946741 - 49946693
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| || | |||||||||||||||||||| |||||||||||||    
T  49946741 aaaataaattaaatgtgattgaagtattatatgataatttatcatgtta 49946693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 35349598 - 35349469
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcctct 361  Q
    ||||||||||||||||||  |||||||||||| ||| | || |||||| || |||||| |  |||||| |||| |||||| ||| || || |||||| |     
T  35349598 attgaagtattatatgattgtttatcatgttaatatgttaactttttataaaacatttca--gtgtccgtaatttaaaaatgaaaagtaaaccctccccc 35349501  T
Q  362 cctttcacctctcaaaccctccatccaaacacac 395  Q
    ||  || ||||| |||||||||||||||||||||    
T  35349500 cc--tcccctcttaaaccctccatccaaacacac 35349469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 340
Target Start/End: Original strand, 51597759 - 51597854
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaa 340  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||| ||| ||| | || |||||||| | ||||| || |||| |||||| |||||    
T  51597759 aaaataaattaagtgtgattgaagtattatatgattgtttatcatcttaatatgttaactttttaaaaaccatttcatagtgttcataatttaaaa 51597854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 52707730 - 52707789
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatt 299  Q
    |||| |||||||||| | ||||  |||||||||||||| ||||||||||||||| |||||    
T  52707730 tttttaaaaataaattatgtatttttgaagtattatatcatcatttatcatgttgttatt 52707789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 2506630 - 2506696
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |  |||||||||||||||||||||||| || || ||| ||| ||||||||||    
T  2506630 aaaataaattaagtgtttttgaagtattatatgatcatttattatattgttaattcgattttttaaa 2506696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 20576270 - 20576236
Alignment:
Q  260 atgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||||||||||| ||||||||||||    
T  20576270 atgattgaagtattatatgatcgtttatcatgtta 20576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 47071160 - 47071242
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    ||||| |||| ||||||||||||||||||| ||| || |||||| |||| | ||||||||  ||||| |||| ||||||||||    
T  47071160 ttgaaatattttatgatcatttatcatgttgttaattaaattttctaaaaatcattttataatgtccgtaatttaaaaaagaa 47071242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 25268355 - 25268500
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||||||||||||||| ||| ||  || |||||| |||| | ||||||||  | ||| |||| ||||||||     
T  25268355 aaaataaattaagtgtttttgaagtattatatgatcatttatcacgttgttgattaaattttctaaaaatcattttataatttccgtaatttaaaaaagg 25268454  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaa 390  Q
    | || || |||||| |||  ||| |||   ||||||||||||||||    
T  25268455 aaagtaaaccctcccctcacttccccttctaaaccctccatccaaa 25268500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 26940996 - 26940963
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatga 279  Q
    |||||||||||||| |||||||||||||||||||    
T  26940996 aaaataaatcaagtgtgattgaagtattatatga 26940963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 42742463 - 42742398
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt-atttcaatttttta 310  Q
    ||||||||| |||| ||||||||||| |||||||  |||||||||||| || |||| |||||||||    
T  42742463 aaaataaattaagtgtgattgaagtactatatgactatttatcatgttgttcatttaaatttttta 42742398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 434
Target Start/End: Complemental strand, 13601478 - 13601450
Alignment:
Q  406 gttactaggagatccatttttcacaatct 434  Q
    |||||||||||||||||||||||||||||    
T  13601478 gttactaggagatccatttttcacaatct 13601450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 27739142 - 27739206
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 310  Q
    ||||| ||| |||| |||||||||||||  |||||||||||||||||| || ||| | |||||||    
T  27739142 aaaatcaattaagtgtgattgaagtatttaatgatcatttatcatgttgttttttgattttttta 27739206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 45585838 - 45585790
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |||| |||||| ||||||||| ||||||||||||    
T  45585838 aaaataaattaagtgtgatcgaagtactatatgatcgtttatcatgtta 45585790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 49065548 - 49065596
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||||| |||| |||||||||||||||||||  ||||||||| |||||    
T  49065548 aataaattaagtgtgattgaagtattatatgaaaatttatcatattatt 49065596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 52711825 - 52711797
Alignment:
Q  265 tgaagtattatatgatcatttatcatgtt 293  Q
    |||||||||||||||||||||||||||||    
T  52711825 tgaagtattatatgatcatttatcatgtt 52711797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 473 - 390
Alignment:
Q  17 aagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  473 aagaaggttaacaaaggaatattcatcatcaaatgccttaataagtttaggaacttggtgaattggtcattttggctagccatt 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 328
Target Start/End: Complemental strand, 24243199 - 24243118
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtc 328  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  24243199 aaattaattaagtgtgattgaagtattatatgatcatttatcatgttattatttcaatttttaaaagacattttatagtgtc 24243118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 43732776 - 43732928
Alignment:
Q  244 aaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaa 342  Q
    ||||||||||| |||| |  ||||||||||||||||||||||||||| || ||| |||||||||  ||| | ||||||||  ||||| |||| |||||||    
T  43732776 aaaaaataaattaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatgtccgtaatttaaaaaa 43732875  T
Q  343 gaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| || || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  43732876 gaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 43732928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 12022296 - 12022145
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||| | |||| |||||||||    
T  12022296 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaaga 12022197  T
Q  345 atagcaatccctcctctcctttcacc-tctcaaaccctccatccaaacacac 395  Q
    | || || |||||| |||| ||| || ||||||||||||||||| |||||||    
T  12022196 aaagtaagccctcccctcccttccccttctcaaaccctccatcctaacacac 12022145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 41103659 - 41103507
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataa--tataaaaaa 342  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||| || ||||||||| || ||| || ||||||||||  | ||||||     
T  41103659 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttattgttttaatttttttaaaaacgtttcatagtgtccataatttttaaaaac 41103560  T
Q  343 gaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| | ||| |||||| |||  ||| ||||  |||||||||||||||||||||    
T  41103559 gaaaatcaaaccctcccctctcttcccctcctaaaccctccatccaaacacac 41103507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 31543225 - 31543078
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||| | ||||| |||||| ||| | || ||||||||| |||||| || || ||| |||| |||||| ||    
T  31543225 aaaataaattaagtgtgattgaagtattatatgaccgtttatgatgttaatatgttaacttttttaaaaacatttcatagtttccgtaatttaaaaatga 31543126  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaaca 392  Q
    | || || |||||| |||| ||| ||||| ||||||||||||||||||    
T  31543125 aaagtaaaccctcccctcccttcccctcttaaaccctccatccaaaca 31543078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 5656188 - 5656249
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttat 322  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||    
T  5656188 tgattgaagtgttatatgatcatttatcatgttcttatttcaaatttttaaaaacattttat 5656249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 16024246 - 16024394
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||| |||| | ||||||||    
T  16024246 aaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaat-ttaaaaagaa 16024344  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     || || | |||| |||| ||| ||||  ||| |||||||||||||||||    
T  16024345 aagtaaactctcccctcccttcccctcctaaatcctccatccaaacacac 16024394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 364
Target Start/End: Original strand, 9933332 - 9933451
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| ||||||  ||||| |||||||||||||||||||||||| ||| ||||| |||||||||  ||||||||  |||||| | | |||||||||    
T  9933332 aaaataaattaagtatttttgaaatattatatgatcatttatcatgttgttaattcaatttttttaaaatcattttataatgtccaaattttaaaaaaga 9933431  T
Q  345 atagcaatccctcctctcct 364  Q
    | || || |||||| |||||    
T  9933432 aaagtaaaccctcccctcct 9933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 38198202 - 38198140
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    ||||| ||| |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38198202 aaaatgaattaagtgtgattgaagtattatatgatcatatatcatgttgttatttcaattttt 38198140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 1027002 - 1026954
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  1027002 aaaataaattaagtatgattgaagtattatatgatcgtttatcatgtta 1026954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 16653034 - 16653190
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataa 338  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||||  ||||| ||| || | ||||| ||| |||||| ||  ||||| |||| |||    
T  16653034 ttttataaaataaatcaagtgtgattgaagtattatatgatcgtttattttgttaatatgttaactttttcaaaaacatttcataatgtccgtaatttaa 16653133  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| |  || |||||  |||| ||| ||||| ||||| | |||||||||||||    
T  16653134 aaatgaaaattaaaccctctcctcccttcccctcttaaaccattcatccaaacacac 16653190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 345
Target Start/End: Original strand, 29937614 - 29937693
Alignment:
Q  267 aagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  |||||||||| | ||||||||    
T  29937614 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattttaaaaagaa 29937693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 26167847 - 26167928
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgt 327  Q
    ||||||||| |||  | ||||||||||||||||||||||||||||||| || ||||||| |||| || | ||||||| ||||    
T  26167847 aaaataaataaagagttattgaagtattatatgatcatttatcatgtttttgtttcaatgtttttaaaatattttatagtgt 26167928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 29358490 - 29358397
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||| |||| |||||||||||||||| |||| ||||| |||||| ||| | ||||||| ||| | ||||||| |||||| |||| ||||||    
T  29358490 aataaattaagtgtgattgaagtattataggatcgtttataatgttaatatgttaatttttaaaaaatattttatagtgtccgtaatttaaaaa 29358397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 394
Target Start/End: Complemental strand, 30479870 - 30479721
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| ||||||||||||||||| |||||||||||  ||| ||| || | ||||| |||||||||| || |||||  |||| |||||| ||    
T  30479870 aaaataaatcaagtgtgattgaagtattatattatcatttatcaccttaatatgttaactttttaaaagacatttcatagtgtctgtaatttaaaaatga 30479771  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacaca 394  Q
    | ||  | | |||| |||| | | ||||  ||| ||||||||||||||||    
T  30479770 aaagtgaactctcccctccatccccctcctaaatcctccatccaaacaca 30479721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 8815276 - 8815144
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    |||||||||||||| ||||||||||||||| ||  ||||||||| |||| | ||||||||  ||||| |||| |||||||||| || ||  | ||  |||    
T  8815276 ttgaagtattatataatcatttatcatgttgttgattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaagtcatcacctc 8815177  T
Q  363 ctttcacctctcaaaccctccatccaaacacac 395  Q
      ||| ||||  |||||||||||||||||||||    
T  8815176 tcttcccctcctaaaccctccatccaaacacac 8815144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 9434434 - 9434386
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||||    
T  9434434 ttgaagtattatattatcatttatcatgttgttaattcaattttttaaa 9434386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 20472851 - 20472779
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| ||||||||||||||| |  |||||||||||||||||||| |||||| || ||| ||||||||| ||||    
T  20472851 tttttaaaaataaatcaagtgtttttgaagtattatatgatcatatatcatattgttaattcaattttctaaa 20472779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 30581963 - 30581904
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  30581963 aaaacaaattaagtgtgattgaagtattatatgatcatttatcatgtt-gtatttcaattt 30581904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 39449413 - 39449461
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  39449413 ttgaagtattatatgatcattaatcatgttgttaattcaattttttaaa 39449461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 40990337 - 40990184
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt---aaagacattttatcgtgtccataatataaaaaa 342  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||||| ||| | || | |||   ||| |||||| || ||||| ||||  |||||||    
T  40990337 aaaataaattaagtctgattgaagtattatatgatcgcttatcatgttaatatgttaactctttaaaaaaaacatttcatagtgtctataaattaaaaaa 40990238  T
Q  343 -gaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     |||    || |||||| ||||||||  ||| ||||||||||||||||||||||    
T  40990237 tgaaatataaaccctcccctcctttcttctcccaaaccctccatccaaacacac 40990184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 11575559 - 11575493
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| ||||| ||||||||||||||| |||||||||||| ||| | || ||||||||    
T  11575559 aaaataaattaagtgtgattaaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 11575493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 31738516 - 31738562
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||| |||| | ||||||||||||||||||||||||||||||||    
T  31738516 aataaattaagtgtaattgaagtattatatgatcatttatcatgtta 31738562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 4247670 - 4247625
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatg 291  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||    
T  4247670 aaaataaattaagtatgatttaagtattatatgatcgtttatcatg 4247625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 4775728 - 4775675
Alignment:
Q  244 aaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatta 297  Q
    |||||||||| ||||| |||||||| | || |||||||||||||||||||||||    
T  4775728 aaaaaataaaccaagtgtgattgaaatgttttatgatcatttatcatgttatta 4775675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 27487098 - 27487143
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||    
T  27487098 attgaagtattatatgatcatttatcatgttgttctttcaactttt 27487143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 6315153 - 6315237
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtcc 329  Q
    ||||||||| |||| |||||||||||||||| |||| ||||||| |||| ||| || | ||||||||| |||||| || ||||||    
T  6315153 aaaataaattaagtgtgattgaagtattatacgatcgtttatcaagttaatatgttaatttttttaaaaacatttcatagtgtcc 6315237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 6453293 - 6453341
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||| | |||||||||||||| ||||||||| ||||    
T  6453293 ttgaagtattatatgattacttatcatgttattaattcaattttctaaa 6453341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 7979231 - 7979279
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||||||||   |||||||||||||||||| |||||||||||||    
T  7979231 aaaataaatcaagtgcaattgaagtattatatgattatttatcatgtta 7979279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 395
Target Start/End: Original strand, 30365239 - 30365371
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| | ||||| ||  ||||  |||| |||||||||| || || |||||| |||    
T  30365239 ttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtctgtaatttaaaaaagaaaaggaagccctcccctc 30365338  T
Q  363 ctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||  |||   ||| |||||||||||||||||    
T  30365339 ccttacccttctaaatcctccatccaaacacac 30365371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 37923231 - 37923135
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| ||||  |||| || ||||||||||||||||||||||||| ||||| || | ||| ||| |||||| || |||| |||||| ||||||    
T  37923231 aaaataaattaagtgcgattaaaatattatatgatcatttatcatgttaatattttaactctttaaaaaacatttcatagtgttcataatttaaaaa 37923135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 43826441 - 43826489
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  43826441 ttgaagtattttatgatcatttatcatgttgttaattcaattttctaaa 43826489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 22591544 - 22591501
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    ||||||||||||||||||||||||||||||| ||  ||||||||    
T  22591544 attgaagtattatatgatcatttatcatgttgttcattcaattt 22591501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 34552669 - 34552720
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaattttttaaaga 314  Q
    |||||||||||||||||||||||||||| || || |||||||| ||| ||||    
T  34552669 attgaagtattatatgatcatttatcattttgttctttcaattgtttgaaga 34552720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 281
Target Start/End: Complemental strand, 35694908 - 35694873
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatc 281  Q
    |||||||||||||| |||||||||||||||||||||    
T  35694908 aaaataaatcaagtgtgattgaagtattatatgatc 35694873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 11033508 - 11033574
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| | || ||||||||  ||||||||||| |||||||||||| ||| | |||||||||||    
T  11033508 aaaataaattatgtgtgattgaataattatatgatcgtttatcatgttaatatgttaattttttaaa 11033574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 36308928 - 36308982
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||| ||||||||  |||| ||||||||||||||||||||  ||||||||||||    
T  36308928 ttttataaaataaactaagtgtgattgaagtattatatgattgtttatcatgtta 36308982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 42650489 - 42650443
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgt 292  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||||||    
T  42650489 aaaataaattaagtgtgattgaagtattatatgattgtttatcatgt 42650443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 27483652 - 27483717
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| |||| | |||||||||||||||||| |||||||||| | || ||| || ||||||||    
T  27483652 aaataaataaagtgttattgaagtattatatgataatttatcatgctgttctttgaactttttaaa 27483717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 36166253 - 36166208
Alignment:
Q  236 aatattttaaaaaataaatcaagtatgattgaagtattatatgatc 281  Q
    |||||||| |||||| |||||||| |||||||| ||||||||||||    
T  36166253 aatatttttaaaaatcaatcaagtgtgattgaactattatatgatc 36166208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 3727008 - 3726960
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| ||| ||||||||| |||||||||| | ||||||||||||    
T  3727008 aaaataaattaagcatgattgaaatattatatgaccgtttatcatgtta 3726960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 4689919 - 4689967
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatc 288  Q
    |||| ||||||||||||||| |||||||| | |||||||||||| ||||    
T  4689919 tttttaaaaataaatcaagtgtgattgaaatgttatatgatcatctatc 4689967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 7503107 - 7503059
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||| ||||||||||||||  ||||||||||||    
T  7503107 aaaataaattaagtgtgattaaagtattatatgattgtttatcatgtta 7503059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 30664446 - 30664518
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| |||||||||| |||| ||||||||||||||||| | | |||||||| ||| ||| | || ||||||||    
T  30664446 ttttcaaaaataaattaagtgtgattgaagtattatataaccgtttatcatattaatatgttaactttttaaa 30664518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 34196418 - 34196466
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||||||| |||||| |||| ||| ||||||||| ||||    
T  34196418 ttgaagtattatatgatcgtttatcttgttgttaattcaattttctaaa 34196466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 34641083 - 34641231
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||| ||||  ||||||||  ||||| |||| ||||||||||    
T  34641083 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaa-tcattttataatgtccgtaatttaaaaaagaa 34641181  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     || || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  34641182 aagtaagccctcccctcccttcccctcctaaaccctccatccaaacacac 34641231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 24560308 - 24560458
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| || | ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||||  |||| |||||| ||    
T  24560308 aaaataaattaaatgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtcggtaatttaaaaatga 24560407  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || | ||||  ||| ||| ||||  |||||||||||||||||||||    
T  24560408 aaagtaaactctcccatccgttcccctcctaaaccctccatccaaacacac 24560458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 345
Target Start/End: Original strand, 40858674 - 40858756
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||||||||||||||||||||||||| ||| |||||||||  ||||| ||||||||  ||||| |||| ||||||||||    
T  40858674 ttgaagtattatatgatcatttatcatgttgttaattcaattttcaaaagatcattttataatgtccgtaatttaaaaaagaa 40858756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 651822 - 651917
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||| || ||||||| |||| ||| |||||||||||||| ||||||| ||| |||||| || || |||||||| ||||||    
T  651822 aaaataaattaagtgtgattaaaatattatacgatcctttgtcatgttattattttaatttttcaaaaacatttcatagtttccataatttaaaaa 651917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 341
Target Start/End: Original strand, 37807164 - 37807267
Alignment:
Q  240 ttttaaaaaataaa-tcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatata 337  Q
    |||||||||||||| | |||| ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || ||||||| ||| ||    
T  37807164 ttttaaaaaataaaattaagtgtgattgaagtattatatgatcgtttatcatgttaatatattaactttttaaaaaacatttcatagtgtccaaaattta 37807263  T
Q  338 aaaa 341  Q
    ||||    
T  37807264 aaaa 37807267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 42772117 - 42772184
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    |||| |||||||||| |||| |  |||||||||||||||||||||||||||||| ||| |||||||||    
T  42772117 ttttgaaaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaatttt 42772184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 45663307 - 45663236
Alignment:
Q  236 aatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||  ||||||||| |  | |||||||||||||||| |||||||||||||||| |||||||||||||    
T  45663307 aatattttttaaaataaattatatgtgattgaagtattataagatcatttatcatgttgttatttcaatttt 45663236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 16884124 - 16884059
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  16884124 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgtta-ttcaattttttaaa 16884059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 41110474 - 41110324
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||| ||| | || |||||| || | |||| || |||||| |||| |||||| ||    
T  41110474 aaaataaattaagtgtgattgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttcatagtgtccgtaatttaaaaatga 41110375  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || || ||  |||| ||| ||||  ||| |||||||||||||||||    
T  41110374 aaagtaaaccttctcctcccttcccctcctaaatcctccatccaaacacac 41110324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 18654753 - 18654705
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  18654753 aaaataaattaagtgtaattgaagtattatatgatcatttatcatgtta 18654705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 26135882 - 26136038
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataa 338  Q
    |||| |||||||||| |||| |  |||||||||||||| || ||||||||| || ||| |||||||||  ||| |  |||||||  ||||| |||| |||    
T  26135882 tttttaaaaataaattaagtgtttttgaagtattatataattatttatcatattgttaattcaattttcaaaaaattattttataatgtccgtaatttaa 26135981  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||||||| || || |||||| |||| ||| ||||  ||||||||||| ||| |||||    
T  26135982 aaaagaaaagtaaaccctccactcccttcccctcctaaaccctccattcaatcacac 26136038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 42699771 - 42699699
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||| |||| |  ||||||||||||||||||||||||||| ||  || ||||||||| ||||    
T  42699771 ttttaaaaaataaattaagtgtttttgaagtattatatgatcatttatcatattgataattcaattttctaaa 42699699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 10943767 - 10943620
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||| || |||||| ||||| ||| ||||||||| |||| | ||||||||  | || ||||| |||||||||    
T  10943767 aaaataaattaagtgtttttgaagtattatataattatttattatgttgttaattcaattttctaaaaatcattttataatatctataatttaaaaaaga 10943668  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaaca 392  Q
    | |  ||  | ||  |||||||| ||||| ||||||||||||||||||    
T  10943667 aaattaaatcttctcctcctttcccctcttaaaccctccatccaaaca 10943620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 54996833 - 54996786
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||    
T  54996833 aaaatgaatgaagtgtgattgaagtattatatgatcatttatcatgtt 54996786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Complemental strand, 2387913 - 2387859
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattattt 300  Q
    ||||||||| |||| ||||| || |||||||||||| ||||||||||||||||||    
T  2387913 aaaataaattaagtgtgattaaattattatatgatcgtttatcatgttattattt 2387859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 24253813 - 24253963
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||| |||||| ||||||||||||||| ||| ||||| ||| | |||  ||||||||  ||||| |||| |||||||||    
T  24253813 aaaataaattaagtgtttttgaagtgttatataatcatttatcatgttgttaattcaactttctaaaactcattttataatgtccgtaatttaaaaaaga 24253912  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||  ||| | |||| ||| |||   |||||||||||||||||||||    
T  24253913 aaagtaaatccttccctcccttccccttctaaaccctccatccaaacacac 24253963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 27197802 - 27197736
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| ||||||  || ||||||||||||||||| ||||||||| ||| ||||||||| ||||    
T  27197802 aaaataaattaagtatatttaaagtattatatgatcatctatcatgttgttaattcaattttctaaa 27197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 37237013 - 37237063
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||||||| |||| ||||||||||| || |||||||||||||||||||||    
T  37237013 aaaataaattaagtgtgattgaagtactaaatgatcatttatcatgttatt 37237063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 41414169 - 41414235
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||  |  |||||||||||||||||||||||||||||| |||  |||||||| ||||    
T  41414169 aaaataaatcaagcgtttttgaagtattatatgatcatttatcatgttgttaactcaattttctaaa 41414235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 44412452 - 44412513
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  ||||||||||||||||| |||||||||||| ||| |||||||||    
T  44412452 aaaataaattaagtgtttttgaagtattatatgatgatttatcatgttgttaattcaatttt 44412513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 14898067 - 14898115
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||||||||||||||||||| |||||| |||||    
T  14898067 aaaataaattaagtgtgattgaagtattatatgatcgtttatcgtgtta 14898115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 16275858 - 16275810
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||| |||||||||||||||||| |  ||||||||||||    
T  16275858 aaaataaatcaagtgtgattgaagtattatatggttgtttatcatgtta 16275810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 27542084 - 27542036
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| || | ||||||||||||||||||||| ||||||||||||    
T  27542084 aaaataaattaactgtgattgaagtattatatgatcgtttatcatgtta 27542036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 46204977 - 46205017
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcattta 286  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  46204977 aaaataaattaagtgtgattgaagtattatatgatcattta 46205017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 296
Target Start/End: Complemental strand, 54801985 - 54801926
Alignment:
Q  237 atattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||||| |||| ||||| ||||||||| ||| | ||||||||| |||||||||||||||    
T  54801985 atatttttaaaagtaaattaagtatgatagaaatgttatatgattatttatcatgttatt 54801926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 220550 - 220484
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||||||||||| ||||| |||  ||||| |||||| ||| | || ||||||||    
T  220550 aaaataaatcaagtatgattgaagtgttataagattgtttattatgttaatatgttaactttttaaa 220484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 17474365 - 17474259
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataa 338  Q
    |||| |||||||||| |||| |  |||||||||||| |||| ||||||||| || ||| |||||||||| ||| |  |||||||  ||||| |||| |||    
T  17474365 tttttaaaaataaattaagtgtttttgaagtattatttgattatttatcatattgttaattcaatttttaaaaaattattttataatgtccgtaatttaa 17474266  T
Q  339 aaaagaa 345  Q
    |||||||    
T  17474265 aaaagaa 17474259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 44302941 - 44303002
Alignment:
Q  245 aaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    ||||||| || |||| |||||||||||||||||| |||||| |||   |||||||||||||||||    
T  44302941 aaaaatatatgaagtgtgattgaagtattatatggtcatttgtca---tattatttcaatttttt 44303002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 12790465 - 12790526
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    ||||||| |||| | || |||||| ||||||||| || ||||||||||||||| ||||||||    
T  12790465 aataaattaagtgtaatcgaagtaatatatgatctttcatcatgttattattttaatttttt 12790526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 21090224 - 21090163
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  ||||||||||||||||| || ||||||||| ||| |||||||||    
T  21090224 aaaataaattaagtgtttttgaagtattatatgataatatatcatgttgttaattcaatttt 21090163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 47989118 - 47989061
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa 303  Q
    ||||||||| || | ||||||||| ||||||  || ||||||||||||||||||||||    
T  47989118 aaaataaattaaatgtgattgaagcattataaaattatttatcatgttattatttcaa 47989061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 47998405 - 47998348
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa 303  Q
    ||||||||| || | ||||||||| ||||||  || ||||||||||||||||||||||    
T  47998405 aaaataaattaaatgtgattgaagcattataaaattatttatcatgttattatttcaa 47998348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 48007692 - 48007635
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa 303  Q
    ||||||||| || | ||||||||| ||||||  || ||||||||||||||||||||||    
T  48007692 aaaataaattaaatgtgattgaagcattataaaattatttatcatgttattatttcaa 48007635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 49815506 - 49815559
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    |||| |||||||||| |||  |||||||||||||||||||||||| ||| ||||    
T  49815506 tttttaaaaataaattaagcgtgattgaagtattatatgatcattgatcttgtt 49815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 52185107 - 52185201
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| || ||| ||||||||||||||||||  |||||||||||| ||| | || |||||| || | ||||||  ||||||||||| ||||||    
T  52185107 aaaataaattaaatataattgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttta--gtgtccataatttaaaaa 52185201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 37102301 - 37102206
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    |||||||||||||| || ||||||||||||||||||  |||| |||||| ||| || | ||||| ||| |||||| || |||||| |||| ||||||    
T  37102301 aaaataaatcaagtgtggttgaagtattatatgatc-gttattatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaa 37102206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 40464024 - 40463928
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaat-tttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| ||||  ||||||| | |||||||||  |||||||||||||| ||| ||| |||| ||| ||| ||||| |||||| |||| ||||||    
T  40464024 aaaataaattaagtgagattgaatttttatatgattgtttatcatgttattgttttaatattttaaaaaacaatttatagtgtccgtaatttaaaaa 40463928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 46978536 - 46978584
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||| ||||||||||||||| ||| || |||||| ||||    
T  46978536 ttgaagtattatataatcatttatcatgttgttaattaaattttataaa 46978584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 48686001 - 48685961
Alignment:
Q  270 tattatatgatcatttatcatgttattatttcaatttttta 310  Q
    ||||||||||||  |||||||||| ||||||||||||||||    
T  48686001 tattatatgatcgattatcatgttgttatttcaatttttta 48685961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 51819278 - 51819230
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||  ||| |||||||||||||||| |||| ||||||||||||    
T  51819278 aaaataaatttagtgtgattgaagtattatacgatcgtttatcatgtta 51819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 55428492 - 55428536
Alignment:
Q  268 agtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||||||||||| ||| ||| ||||||||| ||||    
T  55428492 agtattatatgatcatttatcacgttgttaattcaattttctaaa 55428536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 33519140 - 33519289
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||  |||| |||| |||||    
T  33519140 aaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaatttaaagaagaa 33519239  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     || ||||||||| |||| ||| ||||  |||||||||||||||||||||    
T  33519240 aagtaatccctcccctcccttcccctcctaaaccctccatccaaacacac 33519289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 40196685 - 40196535
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||  ||||||| |||  ||| | || |||||| || ||||||||| |||||| ||||  ||||| ||    
T  40196685 aaaataaattaagtgtgattgaagtattatatgattgtttatcaggttgatatgttaactttttataaaacattttatagtgtccgtaattcaaaaatga 40196586  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || ||||||||||| ||| |||| ||||||||||||||||||||||    
T  40196585 aaagtaaaccctcctctcccttcccctcccaaaccctccatccaaacacac 40196535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 264 - 392
Target Start/End: Original strand, 37620883 - 37621012
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    |||||||||||||| ||| |||||||||||  || |||||||||  ||| | ||||||||  |||||||||| |||||||||| ||||| |||||| |||    
T  37620883 ttgaagtattatataatcttttatcatgttgataattcaattttccaaaaatcattttataatgtccataatttaaaaaagaaaagcaaaccctcccctc 37620982  T
Q  363 ctttcacctctcaaaccctccatccaaaca 392  Q
    | ||| | ||||||||||||||||||||||    
T  37620983 ccttcccttctcaaaccctccatccaaaca 37621012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 395
Target Start/End: Complemental strand, 48881717 - 48881561
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt-ttaaagacattttatcgtgtccataatataa 338  Q
    |||| |||||||||| ||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||| | |||   |||||||  ||||| |||| |||    
T  48881717 tttttaaaaataaattaagtatttttgaagcattatataatcatttatcatgttgttaattcaattttctgaaaattattttataatgtccgtaatttaa 48881618  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||||||| || || || ||| |||| ||| ||||  |||||||||||||||||||||    
T  48881617 aaaagaaaagtaagccatcccctcccttcccctcctaaaccctccatccaaacacac 48881561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 395
Target Start/End: Complemental strand, 30592389 - 30592256
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctct 361  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||| | |||||||| |||||  |||| |||||||||| || || ||||||  |    
T  30592389 attgaagtattatatgattatttatcatatgattatttcaattttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctccctt 30592290  T
Q  362 cctttcacctctcaaaccctccatccaaacacac 395  Q
    || ||  ||||  ||| |||||||||||| ||||    
T  30592289 ccctttccctcctaaatcctccatccaaatacac 30592256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 33655261 - 33655148
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| |||||| ||    
T  33655261 aaaataaattaagtgtgattgaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatga 33655162  T
Q  345 atagcaatccctcc 358  Q
    | || || ||||||    
T  33655161 aaagtaaaccctcc 33655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 36267688 - 36267556
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    ||||||||||||||||||||||||||| || ||  ||||||||| |||| | ||||||||  | ||| |||| |||||||||| |  || |||||| |||    
T  36267688 ttgaagtattatatgatcatttatcatattgttgattcaattttctaaaaatcattttataatatccgtaatttaaaaaagaaaactaagccctcccctc 36267589  T
Q  363 ctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||| ||||  |||||||||||||||||||||    
T  36267588 ccttcccctcctaaaccctccatccaaacacac 36267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 23116413 - 23116299
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaa-agaca-ttttatcgtgtccataatataaaaaag 343  Q
    |||| |||| |||| ||||||||||||||||| |||||||||||||||  |||||||||||||||| | ||| |||||| |||||  |||| ||||||||    
T  23116413 aaaaaaaattaagtgtgattgaagtattatataatcatttatcatgttgctatttcaattttttaataaacacttttatagtgtctgtaatttaaaaaag 23116314  T
Q  344 aatagcaatccctcc 358  Q
    || || || ||||||    
T  23116313 aaaagtaagccctcc 23116299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 41497110 - 41496960
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||| |||||||||||||||||||||||| ||| || ||||||| ||| ||||||  |  ||||| |||| ||||||  |    
T  41497110 aaaataaattaagtgtgattgaagaattatatgatcatttatcatgttaatatgttaaatttttaaaaaacatttcctattgtccgtaatttaaaaataa 41497011  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||  | ||| |||| ||| ||||  |||||||||||||||||||||    
T  41497010 aaagtaaatcatcccctcccttcccctcctaaaccctccatccaaacacac 41496960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 308
Target Start/End: Complemental strand, 18127390 - 18127333
Alignment:
Q  251 aaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    |||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18127390 aaattaagtgtgattgaagtattatatgatcatttatcatgttactatttcaagtttt 18127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 20393693 - 20393754
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    |||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||| ||||    
T  20393693 aaataaattaagtgtgattgaagtattatatgatcatttataatgttactatttcaagtttt 20393754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 18063714 - 18063667
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  18063714 aaaataaattaagtgtgattgaagtattatatgatcatttatcatgtt 18063667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 22163262 - 22163167
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||| ||| | | ||| | ||| |||||| || |||||| |||| ||||||    
T  22163262 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttaatatgttactttctaaaaaacatttcatagtgtccgtaatttaaaaa 22163167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 22221970 - 22221875
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||| ||| | | ||| | ||| |||||| || |||||| |||| ||||||    
T  22221970 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttaatatgttactttctaaaaaacatttcatagtgtccgtaatttaaaaa 22221875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 28074255 - 28074156
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||| |||| |  |||||||||||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||  ||||| |||| ||||||||||    
T  28074255 aaataaattaagtgtttttgaagtattatatgatcatttatcaggttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaa 28074156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 48093984 - 48094043
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatt 305  Q
    ||||||||| |||| || || |||||||||||||||||||||||| ||||||||||||||    
T  48093984 aaaataaattaagtgtggttaaagtattatatgatcatttatcattttattatttcaatt 48094043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 3216013 - 3215947
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||   |||||||||||||||||||||||||| || ||| ||||||||| ||||    
T  3216013 aaaataaatcaagtatttatgaagtattatatgatcatttatcatattgttaattcaattttctaaa 3215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 16833804 - 16833852
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||| |||||||||||||||||||||| ||||||||| ||||    
T  16833804 ttgaagtattacatgatcatttatcatgttattaattcaattttataaa 16833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 4833684 - 4833537
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| || | ||||| ||||||||||||||  |||||||||||| ||  | || |||||| || |||||| || |||||  |||| |||||| ||    
T  4833684 aaaataaattaaatgtgatttaagtattatatgattgtttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatga 4833585  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaaca 392  Q
    | || || |||||| |||| ||| ||||  ||||||||||||||||||    
T  4833584 aaagtaaaccctcccctcccttcccctcctaaaccctccatccaaaca 4833537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 12670971 - 12670928
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  12670971 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 12670928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 7791825 - 7791871
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||||    
T  7791825 tgatttaagtattatatgattatttatcatgtttttatttcaatttt 7791871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 17852962 - 17853016
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattattt 300  Q
    ||||||||| |||| ||||||| ||||||||||||| ||||||||||| ||||||    
T  17852962 aaaataaattaagtgtgattgaggtattatatgatcgtttatcatgttgttattt 17853016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 395
Target Start/End: Original strand, 18231693 - 18231827
Alignment:
Q  262 gattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctc 360  Q
    |||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || ||||   |||| |||||| ||| || ||  ||||| |    
T  18231693 gattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcctcccc 18231792  T
Q  361 tcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| ||||  |||| ||||||||||||||||    
T  18231793 tcccttcccctcctaaacgctccatccaaacacac 18231827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 19261998 - 19261929
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| |||||||||| || | ||||||||||| |||||||||||||||||||   || |||||||||||||||    
T  19261998 ttttgaaaaataaattaattgtgattgaagtactatatgatcatttatcatg---ttctttcaattttttaaa 19261929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 24970318 - 24970252
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||| |||| ||| | || ||||||||    
T  24970318 aaaataaattaagtgtgattgaagtattatatgatcgtttatcaagttaatatgttaactttttaaa 24970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 34235160 - 34235010
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||| ||| ||| | || |||||| || |||||| || |||||| |||| |||||| ||    
T  34235160 aaaataaattaagtgtgattgaagtattatatgattgtttatcatattaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatga 34235061  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||   |||| |||   || |  ||||||||||||||||||||||||    
T  34235060 aaagtaaattctcccctctcgtccctactcaaaccctccatccaaacacac 34235010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 47390961 - 47391097
Alignment:
Q  261 tgattgaagtattatatga-tcatttatcatgttattatttcaattttttaaagaca-ttttatcgtgtccataatataaaaaagaatagcaatccctcc 358  Q
    ||||||||||||||||||| |  |||||||||||| ||| | ||  ||||||| |   |||||| |||||| |||| |||||| ||| | ||| | ||||    
T  47390961 tgattgaagtattatatgacttgtttatcatgttaatatgttaacattttaaaaaatgttttatagtgtccgtaatttaaaaatgaaaaccaaactctcc 47391060  T
Q  359 tctcctttcacctctcaaaccctccatccaaacacac 395  Q
     |||| ||| ||||| |||||||||||||||||||||    
T  47391061 cctcccttcccctcttaaaccctccatccaaacacac 47391097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 3143565 - 3143641
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt----attatttcaattttttaaa 312  Q
    ||||| ||||||||| |||| |  ||||||||||||||||||||||||||| ||    |||| ||||||||||||||    
T  3143565 ttttataaaataaattaagtttttttgaagtattatatgatcatttatcattttgttaattaattcaattttttaaa 3143641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 13425279 - 13425225
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||||||||| |||| ||| |||||||| |||||||  ||||||||||||    
T  13425279 ttttaaaaaataaattaagtgtgaatgaagtataatatgattgtttatcatgtta 13425225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 21857438 - 21857504
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |  ||||| |||| ||||||||||||||||||| ||| ||||||||| ||||    
T  21857438 aaaataaattaagtgtttttgaaatattgtatgatcatttatcatgttgttaattcaattttctaaa 21857504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 307
Target Start/End: Original strand, 26365874 - 26365920
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||||||||||||||  ||| |||||||||||||| ||||||    
T  26365874 tgattgaagtattatatgattgtttctcatgttattattttaatttt 26365920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 29814424 - 29814358
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||  |||| || ||||| | |||||||||||| ||||||||||||  ||||||||||||||    
T  29814424 aaaataaactaagtgtggttgaaatgttatatgatcatctatcatgttattcgttcaattttttaaa 29814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 37562737 - 37562774
Alignment:
Q  256 aagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  37562737 aagtgtgattgaagtattatatgatcaattatcatgtt 37562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 37929966 - 37929869
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatg-ttattatttcaattttttaaagacattttatcgtgtccataatataaaaaa 342  Q
    ||||||||| || | | ||||||||||||||  ||||||| ||||| || ||||||| || ||||||| | ||||||| || |||||||| |||||||    
T  37929966 aaaataaattaaatgtaattgaagtattataaaatcatttgtcatgtttgttatttcgatattttaaaaatattttatagtatccataatttaaaaaa 37929869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 10315724 - 10315808
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtcc 329  Q
    |||||||| | ||| ||||||||||||||||| ||| |||||| ||||| ||| || ||||||| ||| |||||| || ||||||    
T  10315724 aaaataaacccagtgtgattgaagtattatataatcgtttatcttgttaatatgttaaatttttaaaaaacatttcatagtgtcc 10315808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 37417776 - 37417740
Alignment:
Q  256 aagtatgattgaagtattatatgatcatttatcatgt 292  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  37417776 aagtgtgattgaagtattatatgatcgtttatcatgt 37417740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 307
Target Start/End: Original strand, 48015323 - 48015359
Alignment:
Q  271 attatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  48015323 attatatgatcatttatcatgttgttaattcaatttt 48015359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48152071 - 48152130
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    |||||||||  ||| |||||||||||||| |||||||||||| |||||| ||||| |||||    
T  48152071 aaaataaatttagtgtgattgaagtatta-atgatcatttattatgttagtattttaattt 48152130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 48663075 - 48663135
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    ||||||||| |||||| |||||| | |||| | ||||| |||||||||||| |||||||||    
T  48663075 aaaataaattaagtataattgaaatgttatttaatcatctatcatgttattctttcaattt 48663135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 23748180 - 23748336
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataa 338  Q
    |||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||| || | ||||| |||||||||| || |||||| || | |||    
T  23748180 ttttcaaaaataaatcaagtgtgattgaagtattatattatcgtttatcatgttaatatgttaactttttaaaagacatttcatagtgtccgtagtttaa 23748279  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| ||  | |||||| |||| ||| ||||  |||||||||||||||||||||    
T  23748280 aaatgaaaagtgaaccctcccctcccttcccctcctaaaccctccatccaaacacac 23748336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 31795922 - 31795772
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt-taaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||| |||||| | |||||  ||| || ||| || |||||| |||| |||||| ||    
T  31795922 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttgttattttattttttaaaaaaacttttcatagtgtccgtaatttaaaaacga 31795823  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||  ||||| |||| ||||||||  |||||||||||||||||||||    
T  31795822 aaagtaagtcctcccctcccttcacctcataaaccctccatccaaacacac 31795772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 35325360 - 35325426
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35325360 aaaataaattaagtatttttgaagtattatatgatcatttatcatgttattaattcaattttttaaa 35325426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 9631652 - 9631801
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||||||| ||| ||||||||||||| ||| |||||||||||| ||| | || |||||||| ||||||| || |||||| |||| |||||| |||    
T  9631652 aaataaatcaagtgtgaatgaagtattatattatcgtttatcatgttaatatgttaactttttaaaggacatttcatggtgtccgtaatttaaaaacgaa 9631751  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     ||  | ||||| ||||| ||  ||||  |||||||||||||||||||||    
T  9631752 aagttaaccctcttctccctttccctcctaaaccctccatccaaacacac 9631801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 396
Target Start/End: Complemental strand, 15085859 - 15085701
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataa-tata 337  Q
    ||||||||||||||| |||| |  |||||||||||||||||||||||||| ||| ||| ||||||||| |||| | ||||||||  ||||| ||| | ||    
T  15085859 ttttaaaaaataaattaagtgtttttgaagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattttataatgtccgtaatttta 15085760  T
Q  338 aaaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacaca 396  Q
    ||||| || || || | ||||||||| |||  |||| ||||  | ||||||||||||||    
T  15085759 aaaaaaaaaagtaagctctcctctcccttcttctcttaaacttttcatccaaacacaca 15085701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 20545800 - 20545860
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    ||||||||| || | |||||||||||||||||||| |||| ||||||||||||||||||||    
T  20545800 aaaataaattaaatgtgattgaagtattatatgattatttctcatgttattatttcaattt 20545860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 31928196 - 31928136
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||||||| |||||||||    
T  31928196 aaataaattaagtgtttttgaagtattatatgatcatttatcatgttattaattcaatttt 31928136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 39732882 - 39732834
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  39732882 aaaataaattaagtatgattgaagtattatatgatcgtttatcatgtta 39732834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 395
Target Start/End: Complemental strand, 36046342 - 36046207
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 359  Q
    ||||||||||||||| |||||||||| ||||||| ||| || | ||||| ||| ||||||| | |||||| |||| |||||| ||| |  || | ||||     
T  36046342 tgattgaagtattatgtgatcatttaacatgttaatatgttaactttttaaaaaacattttctagtgtccgtaatttaaaaatgaaaaataaactctccc 36046243  T
Q  360 ctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| |||| ||||  |||||||||||||||||||||    
T  36046242 ctcatttcccctcctaaaccctccatccaaacacac 36046207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 15224845 - 15224799
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  15224845 aataaattaagtgtgattgaagtattatatgatcatttatcatgtta 15224799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 395
Target Start/End: Original strand, 35736295 - 35736428
Alignment:
Q  259 tatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcc 358  Q
    |||||| |||||||||||||||| |||||||||||||| | |   ||||| ||| || ||| || ||||||  ||| |||||| ||| ||  | ||||||    
T  35736295 tatgatcgaagtattatatgatcgtttatcatgttattttat---tttttaaaaaacttttcatagtgtccgaaatttaaaaacgaaaagtgagccctcc 35736391  T
Q  359 tctcctttcacctctcaaaccctccatccaaacacac 395  Q
     |||| ||||||||  |||||||||||||||||||||    
T  35736392 cctcccttcacctcctaaaccctccatccaaacacac 35736428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 45098260 - 45098322
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||| ||| ||||||||||    
T  45098260 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgttaattcaattttt 45098322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 6721775 - 6721727
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||    
T  6721775 aaaataaatcaagtgtgattgaaatattatattatcatttatcatgtta 6721727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 8427024 - 8426976
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  8427024 aaaataaattaagtgcgattgaagtattatatgatcatttatcatgtta 8426976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 37740044 - 37739996
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  37740044 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgtta 37739996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 41778864 - 41778927
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    ||||||||| |||| |||||||||||||||||||||||||||| | |  || ||||||||||||    
T  41778864 aaaataaattaagtgtgattgaagtattatatgatcatttatcgtttcgttgtttcaatttttt 41778927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 36567002 - 36566956
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||| || | ||||||||||||||||||||||||||||||||||    
T  36567002 aataaattaattgtgattgaagtattatatgatcatttatcatgtta 36566956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 45257398 - 45257548
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||| || ||| |||||||||  ||| | ||||||||  | ||| |||| |||||||||    
T  45257398 aaaataaattaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatatccgtaatttaaaaaaga 45257497  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || || ||  |||| ||| | ||  ||| |||||||||||||||||    
T  45257498 aaagtaaaccatctcctcccttcccatcctaaaacctccatccaaacacac 45257548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 12751906 - 12752019
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt-taaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||| | |||| ||||||||||||||||||||| ||||| || ||||||| | |||||||  ||| | |||| || ||||||||||| | |||| ||    
T  12751906 aaaataatttaagtgtgattgaagtattatatgatcgtttattatattattatattaatttttaaaaaaatatttcatagtgtccataattttaaaacga 12752005  T
Q  345 atagcaatccctcc 358  Q
    | ||||| ||||||    
T  12752006 aaagcaaaccctcc 12752019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 31061450 - 31061511
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  ||||| |||||||||||||||||||||||| ||| |||||||||    
T  31061450 aaaataaattaagtgtttttgaaatattatatgatcatttatcatgttgttaattcaatttt 31061511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 33265697 - 33265758
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||| || ||| |||||||||    
T  33265697 aaaataaattaagtgtttttgaagtattatatgatcatttatcatattgttaattcaatttt 33265758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 395
Target Start/End: Original strand, 42813712 - 42813861
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||||| |||  || |||||||||||||| |||||||| ||| ||| ||||||||| |||| | ||||||||  ||| | |||| ||||||||||    
T  42813712 aaataaatcaaatatttttaaagtattatatgattatttatcaggttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaagaa 42813811  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     |  || || ||| |||  ||| ||||  ||||||| |||||||||||||    
T  42813812 aaataagccatcccctctcttcccctcctaaacccttcatccaaacacac 42813861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 887007 - 887051
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcat 290  Q
    ||||||||| | || ||||||||||||||||||||||||||||||    
T  887007 aaaataaattatgtgtgattgaagtattatatgatcatttatcat 887051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 887210 - 887254
Alignment:
Q  249 ataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    |||||||| || ||||||||||||||||||||| |||||||||||    
T  887210 ataaatcatgtgtgattgaagtattatatgatcgtttatcatgtt 887254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 15915813 - 15915881
Alignment:
Q  237 atattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatt 305  Q
    |||||||  ||||| ||| |||||||||| || ||||||||| ||||||||||| ||||| ||||||||    
T  15915813 atattttttaaaatgaattaagtatgattcaaatattatatggtcatttatcatattattctttcaatt 15915881  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 16565868 - 16565912
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcat 290  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||    
T  16565868 aaaataaattaagtgtgattgaagtattatatgatcgtttatcat 16565912  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 3094488 - 3094445
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||||||||||| |||||||||||| ||| |||||||||    
T  3094488 ttgaagtattatatgattatttatcatgttgttaattcaatttt 3094445  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 18811419 - 18811469
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||||||| |||| |||||||| |||||||||||  ||||||||||||||    
T  18811419 aaaataaattaagtgtgattgaaatattatatgattgtttatcatgttatt 18811469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 42316907 - 42316869
Alignment:
Q  256 aagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  42316907 aagtgtgattgaagtattatatgatcgtttatcatgtta 42316869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 1052890 - 1052842
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||| ||||||| |||||||||||||||| ||| ||||||||| ||||    
T  1052890 ttgaaatattatacgatcatttatcatgttgttaattcaattttctaaa 1052842  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 2241501 - 2241549
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| | ||||||||||||||||||  ||||||||||||    
T  2241501 aaaataaattaagtgtaattgaagtattatatgattgtttatcatgtta 2241549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 12541857 - 12541905
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| ||||  |||||||||| ||||||||| ||||||||||||    
T  12541857 aaaataaattaagtgcgattgaagtactatatgatcgtttatcatgtta 12541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 17379903 - 17379951
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |||||| |||||||||||||  ||||||||||||    
T  17379903 aaaataaattaagtgtgattggagtattatatgattgtttatcatgtta 17379951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 32503250 - 32503294
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcat 290  Q
    ||||||||| |||||||||| || ||||||||||| |||||||||    
T  32503250 aaaataaattaagtatgattaaaatattatatgattatttatcat 32503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 34187666 - 34187757
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatg--atcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataat 334  Q
    ||||||||| |||| |  ||||||||||||||   ||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||||||||    
T  34187666 aaaataaattaagtgtttttgaagtattatatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataat 34187757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 36347694 - 36347646
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||||||||||||||| ||  ||||||||||||    
T  36347694 aaaataaattaagtgtgattgaagtattatataattgtttatcatgtta 36347646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 39354312 - 39354264
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    |||||||||||||| ||||||  |||| |||||||||||| ||||||||    
T  39354312 tgattgaagtattacatgatcgattattatgttattattttaatttttt 39354264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 39821760 - 39821808
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| ||||  |||| |||||||||| |||||||||||||||||    
T  39821760 aaaataaattaagtgcgatttaagtattataagatcatttatcatgtta 39821808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 345
Target Start/End: Complemental strand, 4437584 - 4437478
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataa 338  Q
    |||| ||||||||||||||| |  ||||||||||||||||||| |||||||||| ||| |||||||||||||| | ||||||||  | |||||||| |||    
T  4437584 tttttaaaaataaatcaagtgtttttgaagtattatatgatcaattatcatgttgttaattcaattttttaaaaatcattttataatatccataatttaa 4437485  T
Q  339 aaaagaa 345  Q
    |||||||    
T  4437484 aaaagaa 4437478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 6891451 - 6891547
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||| || ||||||||| ||| || || ||||||||||| ||||||    
T  6891451 aaaataaattaagtgtgattgaagtattatatgatcgtttataatgttattattttaatttttttaaaaacaattcatagtgtccataatttaaaaa 6891547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 248 - 383
Target Start/End: Complemental strand, 21695040 - 21694905
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaat 346  Q
    ||||||| |||| |||||||||||||||||||||| ||||||| || |||||||||||| ||||| | |||||||| |||||| |||| ||||||||||     
T  21695040 aataaattaagtgtgattgaagtattatatgatca-ttatcattttgttatttcaatttattaaaaaccattttatagtgtccgtaatttaaaaaagaaa 21694942  T
Q  347 agcaatccctcctctcctttcacctctcaaaccctcc 383  Q
    || || ||||||  ||| ||| ||||  |||||||||    
T  21694941 agtaagccctcccgtcccttcccctcctaaaccctcc 21694905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 264 - 395
Target Start/End: Original strand, 37761573 - 37761705
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    ||||||| |||||| ||||||||||||||| ||| ||||||||| |||| | ||||| ||  |||||||||| |||||||||| || || |||||| |||    
T  37761573 ttgaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtccataatttaaaaaagaaaaggaagccctcccctc 37761672  T
Q  363 ctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||| ||| | ||| |||||||||||||||||    
T  37761673 ccttccccttttaaatcctccatccaaacacac 37761705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 55510261 - 55510356
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||| |||| | |||| ||||||    
T  55510261 aaaataaattaagtgtgactgaagtattatatgatcattcatcatgttgttatttcaatttttttaaaatattttatagtgttcgtaatttaaaaa 55510356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 17938259 - 17938194
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| |||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||    
T  17938259 aaataaattaagtgtgattgaagtattatatgatcgtttatcatgttattattttaaatttttaaa 17938194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 54576462 - 54576330
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    |||||||||||||| ||||||||||| ||| ||| ||||||||| || | | ||||||||  ||||| |||| |||||||||| || || |||||| |||    
T  54576462 ttgaagtattatataatcatttatcacgttgttaattcaattttctataaatcattttataatgtccgtaatctaaaaaagaaaagtaagccctcccctc 54576363  T
Q  363 ctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||| |||   |||||||||||||||||||||    
T  54576362 ccttccccttctaaaccctccatccaaacacac 54576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 27735836 - 27735986
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| |||  | | | ||| ||| ||||||||| |||||| |||| |||||| ||    
T  27735836 aaaataaattaagtgtgattgaagtattatatgatcatttatcatgttaatatgctaactctttaaaaaacattttatagtgtccgtaatttaaaaatga 27735935  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | |   | ||||   |||| ||| ||||  |||||||||||||||||||||    
T  27735936 aaaatgaaccctatcctcccttcccctcctaaaccctccatccaaacacac 27735986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 37711234 - 37711288
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattattt 300  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||    
T  37711234 aaaataaattaagtgtgattgaagtattatatgatcatttatcatgttaatattt 37711288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 47433861 - 47433796
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||| |||||||||||    
T  47433861 aaaataaattaagtgtgattgaagtattatatgatcgtttat-atgttattattttaattttttaaa 47433796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 11842399 - 11842464
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| ||| |||| |||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  11842399 aaatgaattaagtctgattgaagtattatatgatcatttatcatattgtaatttcaattttttaaa 11842464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 346
Target Start/End: Original strand, 16400891 - 16400992
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagac-attttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| || ||||||||||||||||||||||| |||||||||||| ||| | || |||||||| || |||| || |||||| |||| |||||| ||    
T  16400891 aaaataaattaattatgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaactatttcatagtgtccctaatttaaaaacga 16400990  T
Q  345 at 346  Q
    ||    
T  16400991 at 16400992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 5307098 - 5307162
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 310  Q
    |||||||||||||| |||||| |||||| |||||||||||||| || | ||||||||||||||||    
T  5307098 aaaataaatcaagtgtgattgcagtattttatgatcatttatcgtgatgttatttcaatttttta 5307162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 22186810 - 22186910
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||| ||||||||||||||| ||| ||||||||| |||| | ||||||||  ||||| |||| |||||||||    
T  22186810 aaaataaataaagtgtttttgaagtattatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaaga 22186909  T
Q  345 a 345  Q
    |    
T  22186910 a 22186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 34108385 - 34108314
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||| |||||||||||||||||||||  || ||||||||||||| ||||| | |||||||||    
T  34108385 ttttaaaaaataaattaagtatgattgaagtattatacaataatttatcatgtta-tattttacttttttaaa 34108314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 43961501 - 43961601
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||||||  || ||||||||| |||| | ||||||||  ||| |||||| |||||||||    
T  43961501 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgttgataattcaattttctaaaaatcattttataatgttcataatttaaaaaaga 43961600  T
Q  345 a 345  Q
    |    
T  43961601 a 43961601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 36151667 - 36151762
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||| ||| | || |||| |||  |||||| | |||| |||||| ||||||    
T  36151667 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaacttttaaaaatcattttctagtgttcataatttaaaaa 36151762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 45132654 - 45132559
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||| ||| ||| | || |||||||| ||||||  | |||| |||||| ||||||    
T  45132654 aaaataaattaagtgtgattgaagtattatatgatcgtttatcattttaatatgttaactttttaaaaacatttcgtagtgtacataatttaaaaa 45132559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 54935159 - 54935310
Alignment:
Q  246 aaaataaatcaagtatgattgaagtatt-atatgatcatttatcatgttattatttcaattttttaaag-acattttatcgtgtccataatataaaaaag 343  Q
    ||||||||| |||| ||||||||||||| |||||||| |||||||| ||| |||   || ||||||||  |||||| || |||||| |||| |||||| |    
T  54935159 aaaataaattaagtgtgattgaagtatttatatgatcgtttatcatattaatatgataactttttaaaatacatttcatagtgtccgtaatttaaaaatg 54935258  T
Q  344 aatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    || |  || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  54935259 aaaaataaaccctcccctcccttcccctcctaaaccctccatccaaacacac 54935310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 41174436 - 41174586
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||| | ||||||| ||||||||||||||||||| |||||| |||   || |||||||| | ||||| || |||||| |||  |||||| ||    
T  41174436 aaaataaatcaaatgtgattgatgtattatatgatcatttattatgttaatatgctaactttttaaaaaccatttcatagtgtccctaaattaaaaatga 41174535  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | |  || || ||| |||| ||| ||||  |||||||||||||||||||||    
T  41174536 aaactaaaccatcccctcccttcccctcctaaaccctccatccaaacacac 41174586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 45741981 - 45742131
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| || | ||||||||||||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| |||||| ||    
T  45741981 aaaataaattaaatgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaatga 45742080  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || | |||| |||| ||  || |  ||||||| |||||||||||||    
T  45742081 aaagtaaactctcccctccctttcccgcctaaacccttcatccaaacacac 45742131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 46007854 - 46007788
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||| ||| | || ||||||||    
T  46007854 aaaataaattaagtgagattgaagtattatatgatcatttatcatgttaatatgttaactttttaaa 46007788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 49735621 - 49735471
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatta-tttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| |||| ||| |||||||| ||| |||||||||||| ||  || | ||||| |||||||||| ||  ||||| |||| |||||| ||    
T  49735621 aaaataaatcaagtgtgatagaaatattatattatcgtttatcatgttaataggttaactttttaaaagacatttcatgttgtccgtaatttaaaaatga 49735522  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | ||  | |||||| |||| ||| ||||  |||||||| ||||||||||||    
T  49735521 aaagtgaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 49735471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 1968512 - 1968464
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||    
T  1968512 aaaataaatcaggtgtgattgaagtattatatgatcgtttatcatgtta 1968464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 5730983 - 5730935
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  5730983 aaaataaattaagtgtaattgaagtattatatgatcatttatcatgtta 5730935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 26167028 - 26167076
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||||||||    
T  26167028 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgtta 26167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 29993924 - 29993824
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    |||||| || ||||||  |||||||||||||| |||||  |||||||| ||| ||||||||| |||| | |||||||| |||||| |||| |||||||||    
T  29993924 aaaatagattaagtatttttgaagtattatatcatcatcaatcatgttgttaattcaattttctaaaaatcattttatagtgtccgtaatttaaaaaaga 29993825  T
Q  345 a 345  Q
    |    
T  29993824 a 29993824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 35248777 - 35248825
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||||||    
T  35248777 aaaataaattaagtgtgattgaagtattatatgattatttatcatgtta 35248825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 47846208 - 47846108
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||||||||||||| |||||||||||| ||| ||||||||| |||| |  |||||||  |||||| ||| |||||||||    
T  47846208 aaaataaattaagtgtttttgaagtattatatgattatttatcatgttcttaattcaattttgtaaaaattattttataatgtccagaatttaaaaaaga 47846109  T
Q  345 a 345  Q
    |    
T  47846108 a 47846108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 7977631 - 7977588
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  7977631 ttgaagtattatatgatcatttatcatgttgttaattcaatttt 7977588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 322
Target Start/End: Original strand, 8347292 - 8347367
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttat 322  Q
    ||||||||| |||||||||||  |||||||||||||||||||||| | || ||||||  ||||||| | |||||||    
T  8347292 aaataaatctagtatgattgatatattatatgatcatttatcatgctgttgtttcaacgttttaaaaatattttat 8347367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 17182638 - 17182576
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    ||||||||| |||| |  ||||||||||||||||||||||||||| || ||| ||||||||||    
T  17182638 aaaataaattaagtgtttttgaagtattatatgatcatttatcatattgttaattcaattttt 17182576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 54320525 - 54320675
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |||||| |||||||||||||  |||||||||||| |||  | | ||||| ||| || ||| || |||||| |||| ||||||  |    
T  54320525 aaaataaattaagtgtgattggagtattatatgattgtttatcatgttaatatgctaactttttaaaaaacgtttcatagtgtccgtaatttaaaaatta 54320624  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | | ||| |||||| |||| ||| ||||  |||||||| ||||||||||||    
T  54320625 aaatcaaaccctcccctcccttcccctcctaaaccctcaatccaaacacac 54320675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 18516630 - 18516577
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||||||||| ||| |||| ||||||||| ||||| |||||||||||||||||    
T  18516630 ttttaaaaaatgaattaagtgtgattgaagcattatgtgatcatttatcatgtt 18516577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 41227576 - 41227621
Alignment:
Q  251 aaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    |||| |||| ||||||||||||||||||||||||||||| ||||||    
T  41227576 aaattaagtgtgattgaagtattatatgatcatttatcacgttatt 41227621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 56135840 - 56135888
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |  |||||||||||||||||||||||||||||||    
T  56135840 aaaataaattaagtgtttttgaagtattatatgatcatttatcatgtta 56135888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 29798379 - 29798422
Alignment:
Q  250 taaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||    
T  29798379 taaatcaagtgtgattgaagtattatatgatcgtttattatgtt 29798422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 47694440 - 47694487
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||||||    
T  47694440 aaaatcaatcaagtgcggttgaagtattatatgatcatttatcatgtt 47694487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 51075215 - 51075254
Alignment:
Q  273 tatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  51075215 tatatgatcatttatcatgttgttaattcaattttttaaa 51075254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 54001238 - 54001208
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||||||||||||||||||||    
T  54001238 ttgaagtattatatgatcatttatcatgtta 54001208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 2917101 - 2917068
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||||||||||||||| ||||||||||||    
T  2917101 tgattgaagtattatatgatcgtttatcatgtta 2917068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 14539363 - 14539424
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||| |||| |  |||||||||||||||||||||||| ||||| ||| || ||||||    
T  14539363 aaaataaattaagtgtttttgaagtattatatgatcatttattatgttcttaatttaatttt 14539424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 22921074 - 22921123
Alignment:
Q  248 aataaatcaa-gtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||    
T  22921074 aataaatcaaagtgtgattgaagtattatatgatcgtttatcatattatt 22921123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 22970725 - 22970676
Alignment:
Q  248 aataaatcaa-gtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    |||||||||| || ||||||||||||||||||||| |||||||| |||||    
T  22970725 aataaatcaaagtgtgattgaagtattatatgatcgtttatcatattatt 22970676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 5825013 - 5825053
Alignment:
Q  272 ttatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  5825013 ttatatgatcatttatcatgttgttaattcaattttctaaa 5825053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 9030301 - 9030373
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||| ||||||| |||| |  || ||||||||||| |||||||||||| |||||| || |||||| ||||    
T  9030301 ttttaaacaataaattaagtgtttttaaagtattatataatcatttatcattttattaattaaattttctaaa 9030373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 11089625 - 11089673
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||    
T  11089625 ttgaagtaatatatgatcatttatgatgttgttaattcaattttctaaa 11089673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 296
Target Start/End: Original strand, 23813186 - 23813242
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    |||| |||| ||||| |||| | ||||||||| |||||||||||||||| |||||||    
T  23813186 ttttgaaaattaaataaagtgttattgaagtactatatgatcatttatcgtgttatt 23813242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 28332899 - 28332935
Alignment:
Q  250 taaatcaagtatgattgaagtattatatgatcattta 286  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28332899 taaattaagtatgattgaagtattatatgatcgttta 28332935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 55080688 - 55080736
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||| ||||||||||||||||||| ||| || |||||| ||||    
T  55080688 ttgaagtattttatgatcatttatcatgttgttaattaaattttctaaa 55080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 242307 - 242456
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| ||||||  ||||| |||||||| ||||||||||||||  ||| |||||||||||||| | ||||||||  ||||| |||| |||||||||    
T  242307 aaaataaatgaagtatttttgaattattatatcatcatttatcatgtcgttaattcaattttttaaaaatcattttataatgtccgtaatttaaaaaaga 242406  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacaca 394  Q
    | || || |||||| |||| ||| |||   ||||| ||||||||||||||    
T  242407 aaagtaaaccctcccctcccttccccttataaaccatccatccaaacaca 242456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 16449 - 16302
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||| ||| | ||  ||||| || |||||| || |||| |||||| |||||| ||    
T  16449 aaaataaattaagtgtgattgaagtattatatgattgtttatcatgttaatatgttaacgttttataaaacatttcatagtgttcataatttaaaaatga 16350  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaaca 392  Q
    | || || |||||| |||||||  ||||  ||||||||||||||||||    
T  16349 aaagtaaaccctcccctccttttccctcctaaaccctccatccaaaca 16302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 394
Target Start/End: Original strand, 184716 - 184847
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaagaatagcaatccctcctctc 362  Q
    ||||||||||||||||| || ||||||||| ||| |||||||||  ||| | ||||||||  |||||||||| ||||||||||||| || ||||||  ||    
T  184716 ttgaagtattatatgataatatatcatgttgttaattcaattttaaaaaaatcattttataatgtccataatttaaaaaagaatagtaaaccctcccttc 184815  T
Q  363 ctttcacctctcaaaccctccatccaaacaca 394  Q
    | ||  ||||  ||||||||||||||||||||    
T  184816 cctttccctcctaaaccctccatccaaacaca 184847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 42)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 7544227 - 7544377
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |||||| |||  | | ||||| ||| |||||| || |||||| |||| |||||| ||    
T  7544227 aaaataaatcaagtgtgattgaagtattatatgattgtttattatgttaatatgctaactttttaaaaaacatttcatagtgtccgtaatttaaaaatga 7544326  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | | ||| |||||| || | ||| ||||  |||||||||||||||||||||    
T  7544327 aaaccaaaccctccccttccttcccctcctaaaccctccatccaaacacac 7544377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 13839864 - 13839762
Alignment:
Q  263 attgaagtattatatgatcatttatcatgttattatttcaa-ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctct 361  Q
    ||||||||||||||||||  | ||||||||||||||||||| ||||  ||| ||||||||| ||||||||||| |||||||||| || || | |||||||    
T  13839864 attgaagtattatatgattgtctatcatgttattatttcaacttttcaaaatacattttatagtgtccataatttaaaaaagaaaagtaagctctcctct 13839765  T
Q  362 cct 364  Q
    |||    
T  13839764 cct 13839762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 33744346 - 33744196
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||| | ||||||||||||||||||||| ||| |||||||||  ||| | ||||||||  |||||||||| |||||||||    
T  33744346 aaaataaattaagtgtttttgaagaaatatatgatcatttatcatgttgttaattcaattttcaaaaaatcattttataatgtccataatttaaaaaaga 33744247  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || |||||| |||| ||| || |   ||||||||||||||||||||    
T  33744246 aaagtaaaccctcccctcccttctccgccttaaccctccatccaaacacac 33744196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 34980901 - 34981051
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||| ||||||||||||||| |||  |||||||| || ||  ||||||||  |||||||||| |||||||||    
T  34980901 aaaataaattaagtgtttttgaagtattatataatcatttatcatgttgttaactcaattttctataaatcattttataatgtccataatttaaaaaaga 34981000  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||  ||||| |||| ||| ||||| |||||||||||  ||||||||    
T  34981001 aaagtaagtcctcccctcccttcccctcttaaaccctccattaaaacacac 34981051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 42681559 - 42681610
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  42681559 tgattaaagtattatatgatcatttatcatgttattattttaattttttaaa 42681610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 10072800 - 10072734
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  10072800 aaaataaattaagtatgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 10072734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 13634802 - 13634952
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| | || |||||||| |||||||||||| |||||||||||| ||| || | ||||| ||| |||||| || |||| | |||| |||||| ||    
T  13634802 aaaataaattatgtgtgattgaattattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatga 13634901  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || || |||||| |||| ||| ||||  |||||||| ||||||||||||    
T  13634902 aaagtaacccctcccctcccttcccctcctaaaccctcaatccaaacacac 13634952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 28279629 - 28279479
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||| ||| || | ||||| ||| |||||| ||  |||||||||| |||||| ||    
T  28279629 aaaataaactaagtgtgattgaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcataatgtccataatttaaaaatga 28279530  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||    ||  | |||||| | || ||||||||||||||||||||||    
T  28279529 aaagtaaattttcaccccctttcccatcccaaaccctccatccaaacacac 28279479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 4373725 - 4373671
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||| |||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  4373725 tttttaaaaataaattaagtgtgattgaaatattatatgatcatttatcatgtta 4373671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 9856971 - 9857037
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||||||| ||||||||||||||||||||| ||||| |||||| ||| | || ||||||||    
T  9856971 aaaataaatcaagtgtgattgaagtattatatgatcgtttattatgttaatatgttaactttttaaa 9857037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 33424961 - 33424895
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt 306  Q
    ||||| ||||||||| || | ||||| ||||||||||||||||||||||||  ||||||||||||||    
T  33424961 ttttataaaataaattaaatctgattaaagtattatatgatcatttatcattctattatttcaattt 33424895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 37551492 - 37551646
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataa 338  Q
    |||| |||||||||| | || ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| |  |||||  || | |||    
T  37551492 tttttaaaaataaattatgtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttca--gtgtctgtagtttaa 37551589  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| || || || |||||||| ||  ||||  |||||||||||||||||||||    
T  37551590 aaatgaaaagtaaaccatcctctccctttccctcgtaaaccctccatccaaacacac 37551646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 395
Target Start/End: Original strand, 37654322 - 37654476
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataa 338  Q
    |||| |||||||||| | || ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| |  |||||  || | |||    
T  37654322 tttttaaaaataaattatgtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttca--gtgtctgtagtttaa 37654419  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||| ||| || || || |||||||| ||  ||||  |||||||||||||||||||||    
T  37654420 aaatgaaaagtaaaccatcctctccctttccctcgtaaaccctccatccaaacacac 37654476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 16938570 - 16938618
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  16938570 aaaataaattaagtgtgattgaaatattatatgatcatttatcatgtta 16938618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 18855697 - 18855761
Alignment:
Q  245 aaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    |||||| ||| |||| ||||| ||||||||||||||||||||||||||| || |||||| |||||    
T  18855697 aaaaatgaattaagtttgatttaagtattatatgatcatttatcatgttgttctttcaaattttt 18855761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 1657963 - 1658054
Alignment:
Q  304 ttttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    ||||| ||| ||||||||| |||||| |||| |||||| ||| || || |||||| |||| ||| ||||  |||||||||||||||||||||    
T  1657963 tttttaaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccctcctaaaccctccatccaaacacac 1658054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 26414984 - 26415135
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||| || |||| |||||||||||||||||| || |||||||||||| ||| | || |||||| || |||||| || |||||  |||  |||||| ||    
T  26414984 aaaatatattaagtgtgattgaagtattatatggtcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtctgtaacttaaaaatga 26415083  T
Q  345 atagcaatccctcctctccttt-cacctctcaaaccctccatccaaacacac 395  Q
    | || || | |||| ||||||| | ||||  |||||||||||||||||||||    
T  26415084 aaagtaaactctcccctcctttccccctcataaaccctccatccaaacacac 26415135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 306
Target Start/End: Complemental strand, 2556144 - 2556110
Alignment:
Q  272 ttatatgatcatttatcatgttattatttcaattt 306  Q
    |||||||||||||||||||||||||||||||||||    
T  2556144 ttatatgatcatttatcatgttattatttcaattt 2556110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 307
Target Start/End: Complemental strand, 6597920 - 6597882
Alignment:
Q  269 gtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  6597920 gtattatatgatcatttatcatgttgttatttcaatttt 6597882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 10204667 - 10204733
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |  |||||||||||||||||||||||| | ||| ||| ||||||||||||||    
T  10204667 aaaataaattaagtgtttttgaagtattatatgatcatttattacgttgttaattcaattttttaaa 10204733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 29002365 - 29002311
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||| |||||||||| || |||||||| |||||||||||||| ||||||||||||    
T  29002365 tttttaaaaataaattaaatatgattgtagtattatatgatcgtttatcatgtta 29002311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 36392312 - 36392255
Alignment:
Q  237 atattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||  |||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  36392312 atattttctaaaatagattaagtgtgattgaagtattatatgatcgtttatcatgtta 36392255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 395
Target Start/End: Original strand, 2183943 - 2184055
Alignment:
Q  284 ttatcatgttattatttcaattttttaaa-gacattttatcgtgtccataatataaaaaagaatagcaatccctcctctcctttcacctctcaaaccctc 382  Q
    |||||||||| ||||||||||||||||||  |||||||||  ||||| |||| |||| | ||| |  || ||||| |||   ||| ||||| ||||||||    
T  2183943 ttatcatgttgttatttcaattttttaaataacattttataatgtccgtaatttaaagaggaaaaataagccctcttctatcttcccctcttaaaccctc 2184042  T
Q  383 catccaaacacac 395  Q
    |||||||||||||    
T  2184043 catccaaacacac 2184055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 10043141 - 10043101
Alignment:
Q  267 aagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||||||||||||||||||||||||| ||| |||||||||    
T  10043141 aagtattatatgatcatttatcatgttgttaattcaatttt 10043101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 11756968 - 11757016
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  11756968 aaaataaattaagtgtgattaaagtattatatgatcatttatgatgtta 11757016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 16501943 - 16501895
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||| ||||| |||| |||||||||||||||| ||||||    
T  16501943 aaaataaatcaagtgtgattaaagttttatatgatcatttattatgtta 16501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 17024377 - 17024329
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    ||||||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  17024377 aaaataaattaagtacgattgaagtattatatgatcgtttttcatgtta 17024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 35244003 - 35244067
Alignment:
Q  245 aaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    |||||||||| || | |||||||  |||||||| ||||||||||||||| |||||||||| ||||    
T  35244003 aaaaataaattaaatgtgattgagatattatataatcatttatcatgtttttatttcaatatttt 35244067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 312
Target Start/End: Complemental strand, 8551572 - 8551505
Alignment:
Q  245 aaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||||| |||| |  || ||||||||||||||||||||| ||||| ||| || |||||||||||    
T  8551572 aaaaataaattaagtgtttttaaagtattatatgatcatttataatgttgttaatttaattttttaaa 8551505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 37607000 - 37607135
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 359  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || || ||  || | |||||| ||| || || || || |    
T  37607000 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtattttaaaaatgaaaagtaaaccatcat 37607099  T
Q  360 ctcctttcacctctcaaaccctccatccaaacacac 395  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37607100 ctccctttccctcgtaaaccctccatccaaacacac 37607135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 37779209 - 37779344
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 359  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||||| || || ||  || | |||||| ||| || || || || |    
T  37779209 tgattgaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtatctgtagtttaaaaatgaaaagtaaaccatcat 37779308  T
Q  360 ctcctttcacctctcaaaccctccatccaaacacac 395  Q
    |||| ||  ||||  |||||||||||||||||||||    
T  37779309 ctccctttccctcgtaaaccctccatccaaacacac 37779344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 21581038 - 21581104
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |  ||||||||| |||||| ||||||||||||| ||| ||||||||| ||||    
T  21581038 aaaataaattaagtgtttttgaagtatcatatgaacatttatcatgttgttaattcaattttctaaa 21581104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 345
Target Start/End: Original strand, 27110120 - 27110218
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||| |||| ||||| || |||||||||||||||||| || ||| | ||| || |||||||| | ||||||| || | | |||| ||||||||||    
T  27110120 aaataaattaagtgtgattaaaatattatatgatcatttattatattaatgttttaaatttttaaaaatattttatagtattcgtaatttaaaaaagaa 27110218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 11437045 - 11437130
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt-aaagacattttatcgtgtccataatataaaaaagaa 345  Q
    |||||||||||||||| |||||||||||  | | |||||| |||||||| ||| ||||||||| |||| | || | ||||||||||    
T  11437045 tgattgaagtattatacgatcatttatcgcgctgttattttaattttttaaaaaacattttatagtgttcctattttaaaaaagaa 11437130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 293
Target Start/End: Original strand, 1977638 - 1977670
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||||||||||||||||||| |||||||||||    
T  1977638 tgattgaagtattatatgatcctttatcatgtt 1977670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 312
Target Start/End: Complemental strand, 2550503 - 2550440
Alignment:
Q  248 aataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||| | || ||||||||||||||||||||  ||||||||| |||||||| |||| ||||||    
T  2550503 aataaattacgtgtgattgaagtattatatgattgtttatcatg-tattattttaattgtttaaa 2550440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 10043361 - 10043409
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||| |||||| ||||| ||| ||||||||| ||||    
T  10043361 ttgaagtattatatgattatttataatgttgttaattcaattttctaaa 10043409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 10476119 - 10476163
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcat 290  Q
    ||||||||| |||| ||||||||||||||||| ||| ||||||||    
T  10476119 aaaataaattaagtgtgattgaagtattatataatcgtttatcat 10476163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 26155792 - 26155844
Alignment:
Q  260 atgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| | |||||||||||| ||||||| ||||  ||||||||||||||    
T  26155792 atgattgaattgttatatgatcatgtatcatgatattcattcaattttttaaa 26155844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 35133076 - 35133025
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaaag 313  Q
    |||||||||||||||||||| | || |||||||||| ||| ||||||||||||    
T  35133076 tgattgaagtattatatgataactt-tcatgttattctttgaattttttaaag 35133025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 393
Target Start/End: Original strand, 36363123 - 36363271
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| | |||||||| |||||| ||  ||||||||| || ||| || | ||| | ||||||||||||| || ||| |||| |||||| ||    
T  36363123 aaaataaatcaagtgtcattgaagttttatatcattgtttatcatgctaatatgttaactttctaaaagacattttatagtatccgtaatttaaaaatga 36363222  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacac 393  Q
    | ||  | | |||  |||| ||| ||||  |||||||||||||||||||    
T  36363223 aaagtgaactctctcctcccttcccctcctaaaccctccatccaaacac 36363271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 40305800 - 40305752
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| ||||    
T  40305800 ttgaagtactatatgatcatttatcatattgttaattcaattttctaaa 40305752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 39343 - 39189
Alignment:
Q  246 aaaataaatcaagtatgattgaag---tattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataaaaa 341  Q
    ||||||||| |||| |||||||||   ||||||||||||||||||||||||| ||| || | ||||| ||| |||||| || |||||| |||| ||||||    
T  39343 aaaataaattaagtgtgattgaagaagtattatatgatcatttatcatgttaatatgttaactttttaaaaaacatttcatagtgtccgtaatttaaaaa 39244  T
Q  342 agaatagcaatccct-cctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     ||| || || |||| || ||| |||| ||||  |||||||||||||||||||||    
T  39243 tgaaaagtaaaccctccccctcatttcccctcctaaaccctccatccaaacacac 39189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 395
Target Start/End: Complemental strand, 30487464 - 30487309
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattat-ttcaattttttaaagacattttatcgtgtccataatataa 338  Q
    ||||| |||||||||||||| ||||||||||||||||| ||  |||||||||||| ||| || | ||||| |||||||||| ||  ||||| |||| |||    
T  30487464 ttttataaaataaatcaagtgtgattgaagtattatattattgtttatcatgttaatatgttgactttttaaaagacatttcatactgtcc-taatttaa 30487366  T
Q  339 aaaagaatagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     || ||| ||  | |||||| |||| ||| ||||  |||||||||||||||||||||    
T  30487365 caatgaaaagtgaaccctcccctcccttcccctcctaaaccctccatccaaacacac 30487309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 31849201 - 31849297
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt-aaagacattttatcgtgtccataatataaaaa 341  Q
    |||||||||||||| ||||||||||||||||| ||  ||||||| |||| ||| | |||||||| ||||||||||||| |||||| |||| ||||||    
T  31849201 aaaataaatcaagtgtgattgaagtattatattattgtttatcacgttaatatgttaattttttaaaagacattttatagtgtccgtaatttaaaaa 31849297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 261 - 395
Target Start/End: Original strand, 10818322 - 10818457
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaat-tttttaaagacattttatcgtgtccataatataaaaaagaatagcaatccctcct 359  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||| ||| |||||| || |||||| |||| |||||| ||| || || ||||||     
T  10818322 tgattgaagtattatatgatcatttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctccc 10818421  T
Q  360 ctcctttcacctctcaaaccctccatccaaacacac 395  Q
    |||| | | ||||  |||| ||| ||||||||||||    
T  10818422 ctccctacccctcctaaactctcaatccaaacacac 10818457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 32926737 - 32926786
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  32926737 aaataaattaagtgtgattgaagtattatatgatcatttatcatgttatt 32926786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 395
Target Start/End: Original strand, 33236042 - 33236191
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaagacattttatcgtgtccataatataaaaaagaa 345  Q
    ||||||||| |||  ||||||||| ||||||||||  |||||||||||| ||| | || |||||||| | |||| || |||||| |||| |||||| |||    
T  33236042 aaaataaattaagactgattgaagaattatatgattgtttatcatgttaatatgttaactttttaaaaaaatttcatagtgtccgtaatttaaaaatgaa 33236141  T
Q  346 tagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
     || |||| |||| ||||||||  |||  |||| ||||||||||| ||||    
T  33236142 aagtaatctctcccctcctttcctctcataaactctccatccaaatacac 33236191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 395
Target Start/End: Original strand, 1300714 - 1300861
Alignment:
Q  249 ataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaagaata 347  Q
    |||||| |||| ||||||||||||||||||||  ||||||| |||| ||| | || |||||| || | |||| ||  ||||| |||| |||||| ||| |    
T  1300714 ataaattaagtgtgattgaagtattatatgattgtttatcaggttaatatgttaactttttataaaatatttcatattgtccgtaatttaaaaatgaaaa 1300813  T
Q  348 gcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || |||||| |||| |||| ||  ||||||||||||||||||||||    
T  1300814 gtaaaccctcccctccattcatcttccaaaccctccatccaaacacac 1300861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 5526879 - 5526832
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaa 311  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5526879 ttgaattattatatgatcatttatcatgttattatttcaaatttttaa 5526832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 396
Target Start/End: Original strand, 26318396 - 26318547
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt-ttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  ||||||||||||||||||| |||||||||| ||| ||||||||| | |||| ||||||||    |||||||| |||||||||    
T  26318396 aaaataaattaagtgtttttgaagtattatatgatcaattatcatgttgttaattcaattttctaaaagtcattttataaaatccataatttaaaaaaga 26318495  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacaca 396  Q
    | || ||  | ||| |||| ||  ||||  |||| |||||||||||||||||    
T  26318496 aaagtaaatcttcccctccctttccctcctaaactctccatccaaacacaca 26318547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 4097665 - 4097599
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||||||| ||| | || ||||||||    
T  4097665 aaaataaattaagtgtgattgaagtattatatgatcgtttatcatgttaatatgttaactttttaaa 4097599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 23924994 - 23924944
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaattttttaa 311  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  23924994 tgattgaagtattatataatcatttatcatgtaattatttcaattatttaa 23924944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 30850054 - 30850004
Alignment:
Q  257 agtatgattgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  30850054 agtataattgaagtattatatgatcgtttatcatgttattattttaatttt 30850004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 31799030 - 31799074
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  31799030 ttgaagtattatatgatcatttatcatgttgttaattcaattttt 31799074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 2892981 - 2892942
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattattt 300  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2892981 tgattgaagtattatatgatcgtttatcatgttattattt 2892942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 16509365 - 16509408
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcat 283  Q
    |||| ||||||||||||||| |||||||||||||||||||||||    
T  16509365 tttttaaaaataaatcaagtgtgattgaagtattatatgatcat 16509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 2892756 - 2892694
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    |||||||||  ||| |||||||| |||||||||||  |||||||||||||||||| |||||||    
T  2892756 aaaataaatttagtgtgattgaaatattatatgattgtttatcatgttattattttaattttt 2892694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 13583810 - 13583876
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |||||||| |||||||||||||||||| ||||||  || | |||||||||||    
T  13583810 aaaataaattaagtgtgattgaaatattatatgatcatttattatgttaacatgttaattttttaaa 13583876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 395
Target Start/End: Complemental strand, 16738149 - 16737999
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattt-tttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||  |||| | ||| ||||||||||||||| | |||||||||||||||| ||||| |  ||| |||||| || || |||||||| |||||| ||    
T  16738149 aaaataaagtaagtgttatttaagtattatatgatcgtatatcatgttattattttaatttatcaaaaaacatttcatagtttccataatttaaaaacga 16738050  T
Q  345 atagcaatccctcctctcctttcacctctcaaaccctccatccaaacacac 395  Q
    | || ||  | ||| |||  |||  |||| |||||||||||||||||||||    
T  16738049 aaagtaaatcttcccctctcttcctctcttaaaccctccatccaaacacac 16737999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 1395721 - 1395793
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||| ||||||||| |||| |||||||| || || |||||||||||||||| || ||| | |||||||||||    
T  1395721 ttttataaaataaattaagtgtgattgaaataatacatgatcatttatcatgctaatatgttaattttttaaa 1395793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 4097394 - 4097322
Alignment:
Q  240 ttttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| |||||||||| |||| |  | |||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  4097394 tttttaaaaataaattaagtgttttggaagtattgtatgatcatttatcatgttgttaattcaattttctaaa 4097322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 6695067 - 6695111
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttt 308  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||    
T  6695067 ttgaagtattatatgatcatttatcatgttgtaatttctattttt 6695111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 14515562 - 14515609
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtt 293  Q
    ||||||||| |||| ||| ||||||||||||| |||||||||||||||    
T  14515562 aaaataaattaagtgtgaatgaagtattatattatcatttatcatgtt 14515609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 21606997 - 21606878
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta-aagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| ||| |||||||||||| |||| |||||||||||| ||| | || |||||| || |||||| || || ||| |||| |||||| ||    
T  21606997 aaaataaataaagtgtgactgaagtattatacgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtttccgtaatttaaaaatga 21606898  T
Q  345 atagcaatccctcctctcct 364  Q
    | || || |||||| |||||    
T  21606897 aaagtaaaccctcccctcct 21606878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 1390411 - 1390476
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||| |||| |||||||| |||||| |||||||||||||||||| ||| | || ||||||||    
T  1390411 aaaataaattaagtttgattgaaatattat-tgatcatttatcatgttaatatgttaactttttaaa 1390476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 3023594 - 3023667
Alignment:
Q  236 aatattttaaaaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttta 310  Q
    ||||||||||||  ||||| |||| ||| |||| ||||||||||| |||||||||||| || ||||| |||||||    
T  3023594 aatattttaaaac-taaattaagtgtgaatgaaatattatatgattatttatcatgttcttttttcattttttta 3023667  T

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Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 17155447 - 17155497
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||| ||| |||| ||||| |||||||||||||||| |||||||||||||    
T  17155447 aaaatcaattaagtgtgatttaagtattatatgatcagttatcatgttatt 17155497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 32922437 - 32922486
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttatt 296  Q
    ||||| || |||| |||| ||||||||||||||| |||||||||||||||    
T  32922437 aaatatattaagtgtgatcgaagtattatatgattatttatcatgttatt 32922486  T

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Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 665994 - 665946
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||| |||| |||| || |||||||||||||| ||||||||||||||||    
T  665994 aaaaaaaattaagtgtggttgaagtattatatcatcatttatcatgtta 665946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 3841176 - 3841277
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga---cattttatcgtgtccataatataaaaaa 342  Q
    ||||||||| |||| |  |||||||||||||| |||||||||||| || ||| ||||||||| |||| |   ||||||||  ||||| |||| |||||||    
T  3841176 aaaataaattaagtgtttttgaagtattatatcatcatttatcat-ttgttaattcaattttgtaaaaaaatcattttataatgtccgtaatttaaaaaa 3841274  T
Q  343 gaa 345  Q
    |||    
T  3841275 gaa 3841277  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 15353472 - 15353520
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| ||||||||||||||||||| ||||| ||| ||||||||| ||||    
T  15353472 ttgatgtattatatgatcatttataatgttgttaattcaattttctaaa 15353520  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 15373734 - 15373686
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||| ||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  15373734 ttgatgtattatatgatcatttgtcatgttgttaattcaattttctaaa 15373686  T

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Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 17842488 - 17842536
Alignment:
Q  261 tgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    ||||| ||||| | ||||||||||||||||| | |||||||||||||||    
T  17842488 tgatttaagtactttatgatcatttatcatgatgttatttcaatttttt 17842536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 19278191 - 19278143
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||  ||| |||||||||||| |||||||| ||||||||||||    
T  19278191 aaaataaatttagtctgattgaagtatcatatgatcgtttatcatgtta 19278143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 345
Target Start/End: Complemental strand, 25468552 - 25468452
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttt-ttaaagacattttatcgtgtccataatataaaaaaga 344  Q
    ||||||||| |||| |  |||||||||||||| ||||||||||| ||| |||  | |||||| |||||   |||||||  |||||||||| |||||||||    
T  25468552 aaaataaattaagtgtttttgaagtattatataatcatttatcacgttgttaaattaattttcttaaaattattttataatgtccataatttaaaaaaga 25468453  T
Q  345 a 345  Q
    |    
T  25468452 a 25468452  T

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Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 34176426 - 34176474
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgtta 294  Q
    |||||||||||||| |||||| ||||||||| |||| ||||| ||||||    
T  34176426 aaaataaatcaagtgtgattgcagtattatacgatcgtttattatgtta 34176474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 312
Target Start/End: Complemental strand, 34176706 - 34176658
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||| |||||||||||||||||| || || ||| ||||||||||||||    
T  34176706 ttgaaatattatatgatcatttattatattgttaattcaattttttaaa 34176658  T

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Target: scaffold0095 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 8256 - 8304
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||||    
T  8256 ttgaagtattatatgatcattaatcatgttgttaattcaattttttaaa 8304  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 1549 - 1484
Alignment:
Q  247 aaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaa 312  Q
    |||||||| ||||||  || ||||||||||||||||||||||| ||| ||| ||||||||| ||||    
T  1549 aaataaattaagtattttttaagtattatatgatcatttatcaagttgttaattcaattttctaaa 1484  T

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Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 6675 - 6737
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaatttttt 309  Q
    |||||||||  ||| ||||||||||||||||||||| ||||| |||||| ||||| ||||||||    
T  6675 aaaataaatttagtgtgattgaagtattatatgatcgtttat-atgttaatattttaatttttt 6737  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 52994 - 53037
Alignment:
Q  264 ttgaagtattatatgatcatttatcatgttattatttcaatttt 307  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||    
T  52994 ttgaaatattatatgatcatttatcatgttgttagttcaatttt 53037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 69340 - 69301
Alignment:
Q  266 gaagtattatatgatcatttatcatgttattatttcaatt 305  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  69340 gaagtattatatgatcatttatcatcttgttatttcaatt 69301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 37474 - 37587
Alignment:
Q  246 aaaataaatcaagtatgattgaagtattatatgatcatttatcatgttattatttcaattttttaaaga-cattttatcgtgtccataatataaaaaaga 344  Q
    |||||||||||||| |  ||||||| ||||||||||| |||||||||| ||| || | |||| |||| | ||| ||||  ||||  |||| |||||||||    
T  37474 aaaataaatcaagtgtttttgaagtgttatatgatcacttatcatgttgttaattaagttttctaaaaatcatcttatattgtctgtaatttaaaaaaga 37573  T
Q  345 atagcaatccctcc 358  Q
    | ||||||| ||||    
T  37574 aaagcaatctctcc 37587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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