View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18329_low_8 (Length: 349)
Name: NF18329_low_8
Description: NF18329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18329_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 41804181 - 41804514
Alignment:
| Q |
1 |
caaataattttcttcaaccaaagccaaatttaatccatttatgatccattaaaggaaatcaacagttctatatatttgagaggtttgaaaccaatttcat |
100 |
Q |
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| T |
41804181 |
caaataattttcttcaaccaaagccaaatttaatccatttatgttccattaaaggaaatcaacagttctatatatttgagaggtttgaaaccaatttcat |
41804280 |
T |
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| Q |
101 |
cccatgcaaaacaatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtg |
200 |
Q |
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| T |
41804281 |
cccatgcaaaacaatatcaataagaaaataaaaacaaacatttataaatacaactatgggaaaagccattgtttcagttgttctagtttcccttgttgtg |
41804380 |
T |
|
| Q |
201 |
gcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgta |
300 |
Q |
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| T |
41804381 |
gcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaagtttggtcattgta |
41804480 |
T |
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| Q |
301 |
tagattgtatgattttgtataaaatgtgtttggt |
334 |
Q |
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| T |
41804481 |
tagattgtatgattttgtataaaatgtgtttggt |
41804514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 66 - 334
Target Start/End: Original strand, 3384964 - 3385232
Alignment:
| Q |
66 |
ttctatatatttgagaggtttgaaaccaatttcatcccatgcaaaacaatatcaataagaaaataaaaa-caaacatttataaatacaactatgggaaaa |
164 |
Q |
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| T |
3384964 |
ttctatatattggagaggtttgaaaccaatttcatgccatgcaaaacaatatcaataagaaaataaaaaacaagcatttatatataca-ctatggggaaa |
3385062 |
T |
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| Q |
165 |
gccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatg |
264 |
Q |
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|||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
3385063 |
accattgcttcacttgttctagtttcccttgtagtggcaatacttctgaatggttataatgccgaggatggaggaagaggtaatcaactgaagaaagatg |
3385162 |
T |
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| Q |
265 |
atggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataaaatgtgtttggt |
334 |
Q |
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| T |
3385163 |
atgctatttacaaatctcaaaagtttgggcaatgtctagattgtacgattttgtataatatatgtttggt |
3385232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3384758 - 3384821
Alignment:
| Q |
1 |
caaataattttcttcaaccaaagccaaatttaatccatttatgatccattaaaggaaatcaaca |
64 |
Q |
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| T |
3384758 |
caaataattttcttcaaccaaagccaaatttaatccattaatgttatattaaagaaaatcaaca |
3384821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 34357101 - 34357232
Alignment:
| Q |
153 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
252 |
Q |
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| T |
34357101 |
actatggcaaaaaccattgcttcacttgttctagttttcctagttgttgcaatg---ctgaatggctatggtgctgagggtgcaggaagagataaccaac |
34357197 |
T |
|
| Q |
253 |
caaagaaagatgatggtatttacaaatctcaaaag |
287 |
Q |
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| T |
34357198 |
ataagaaagatgatggtgtttataaatatcaaaag |
34357232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 4218140 - 4218271
Alignment:
| Q |
153 |
actatgggaaaagccattgtttcagttgttctagtttcccttgttgtggcaatatttctgaatggttataatgctgaggatggaggaagaggtaatccac |
252 |
Q |
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||||||| |||| |||||| |||| ||||| ||||| ||||||||| ||||| || |||||| |||| |||||||| | |||||||||||| || |
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| T |
4218140 |
actatggcaaaaaccattgcttcaattgttttagttctccttgttgttgcaatttt---gaatggctatagtgctgagggtactggaagaggtaatgaac |
4218236 |
T |
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| Q |
253 |
caaagaaagatgatggtatttacaaatctcaaaagttt |
290 |
Q |
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| T |
4218237 |
ctaa---agatgatcgtatttacaaatctcaaaagttt |
4218271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 286
Target Start/End: Original strand, 4215651 - 4215726
Alignment:
| Q |
211 |
tgaatggttataatgctgaggatggaggaagaggtaatccaccaaagaaagatgatggtatttacaaatctcaaaa |
286 |
Q |
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| T |
4215651 |
tgaatggttattgtgctgagggtgcagaaacaagtaatcaaccaaagaaagacgatgatatttacaaatctgaaaa |
4215726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 322
Target Start/End: Complemental strand, 41814389 - 41814327
Alignment:
| Q |
260 |
agatgatggtatttacaaatctcaaaagtttggtcattgtatagattgtatgattttgtataa |
322 |
Q |
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||||||| ||||||||||||||||||| ||| ||| |||| |||||| ||||||||||||| |
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| T |
41814389 |
agatgatcatatttacaaatctcaaaagcttgatcagggtatcgattgtttgattttgtataa |
41814327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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