View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_high_19 (Length: 224)
Name: NF1832_high_19
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 53350424 - 53350495
Alignment:
| Q |
69 |
agctaggaacttttttcttggaggggctgaaaaatatacaatatgtgaacaataatttttcaaatttgagtaatt |
143 |
Q |
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| T |
53350424 |
agctaggaactttttccttggaggggctgaaaaatatacaatatgtgaac---aatttttcaaatttgagtaatt |
53350495 |
T |
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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 53350313 - 53350372
Alignment:
| Q |
11 |
ggactcaaaacaaaaacaagagttcaaagagaacaatggcaaaagctaagaacatgaaag |
70 |
Q |
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| T |
53350313 |
ggactcaaaacagaaacaagagttcaaagagaacaatagcaaaatgcaagaacatgaaag |
53350372 |
T |
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