View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_low_1 (Length: 626)
Name: NF1832_low_1
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 3 - 475
Target Start/End: Complemental strand, 43032988 - 43032516
Alignment:
| Q |
3 |
gtggaggagcagagatgggggttaatatcaaggatgggttatttccggaacacactggaatcacttagtttgagccattctacaggagtttgtgtaaaca |
102 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |
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| T |
43032988 |
gtggagcaacagagatgggggttaatatcaaggatgggttatttccggaacacactgaaatcacctagtttgacccattctacaggagtttgtgtaaaca |
43032889 |
T |
|
| Q |
103 |
agttgactcaattttcatacctagaattataattccgtaacaattgtacaagtcagctcaagactttgacaatcacagttacaaaatcattagggcatat |
202 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43032888 |
agttgactcaattttcatacctagaattataatttcataacaattgtacaagtcagctcaagactttgacaatcacaattacaaaatcattagggcatat |
43032789 |
T |
|
| Q |
203 |
attgaacagaaaccctgaaccaattcaattgaagaatctcatagctagccatacaaatctataaaatcaagcagtacataaaccctaaagtgaatgtaac |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
43032788 |
attgaacagaaaccctgaaccaattcaattgaagaatctcatagctagccatacaaacctataaaatcaagcagttcataaaccctaaagtgaatttaac |
43032689 |
T |
|
| Q |
303 |
aaggcttgtagcataaactaatcaattatcagtaagtgaatagatccaactacaaaacaagtataggcacaggaacaaagttgcagaatcaattttaacc |
402 |
Q |
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| T |
43032688 |
acggcttgtagcataaactaatcaattatcagtaagtgaatagatccaactacaaaacaagtataggcacaggaacaaagttgcagaatcaattttaacc |
43032589 |
T |
|
| Q |
403 |
agtttcaatttcagatattacagcatatatcacaaacatttcataaaagagaataacaccagaaaccctagct |
475 |
Q |
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| T |
43032588 |
agtttcaatttcagatattacagcatatatcacaaacatgtcataaaagagaataacaccagaaaccctagct |
43032516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 274 - 475
Target Start/End: Complemental strand, 43048435 - 43048235
Alignment:
| Q |
274 |
cagtacataaaccctaaagtgaatgtaacaaggcttgtagcataaactaatcaattatcagtaagtgaatagatccaactacaaaacaagtataggcaca |
373 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||| |
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| T |
43048435 |
cagttcataaaccctaaattgaat-taacaaggcttgtaacataaactaatcaattatcactaagtgaatagatccaactacaaagcaagcataggtaca |
43048337 |
T |
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| Q |
374 |
ggaacaaagttgcagaatcaattttaaccagtttcaatttcagatattacagcatatatcacaaacatttcataaaagagaataacaccagaaaccctag |
473 |
Q |
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|||||||||||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
43048336 |
ggaacaaagttgcaaaatcaattctaacaagtttcaatttcagatgttacagcatatatcacaaacatgacataaaagagaataacaccagaaatcctag |
43048237 |
T |
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| Q |
474 |
ct |
475 |
Q |
| |
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|| |
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| T |
43048236 |
ct |
43048235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 528 - 599
Target Start/End: Complemental strand, 43032463 - 43032392
Alignment:
| Q |
528 |
tacaccatcaaccgcacaattaaaatgacataagaagcttcattgaacaaccatcaacaatattttaaatta |
599 |
Q |
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||||| |||| ||||||||| | |||||||||||||||| ||||||||||| ||||||||| |||||||||| |
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| T |
43032463 |
tacacaatcatccgcacaatgagaatgacataagaagctacattgaacaacaatcaacaattttttaaatta |
43032392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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