View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_low_10 (Length: 348)
Name: NF1832_low_10
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 6186636 - 6186948
Alignment:
| Q |
19 |
tttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaac |
118 |
Q |
| |
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|||||||| |||||||||||||||||| |||||||||||| || |||||||||||||||| ||| | |||||||| ||||||||||||||||||||||| |
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| T |
6186636 |
tttctaccattgaattctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaac |
6186735 |
T |
|
| Q |
119 |
caacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186736 |
caacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgt |
6186835 |
T |
|
| Q |
219 |
tgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctaca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186836 |
tgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctaca |
6186935 |
T |
|
| Q |
319 |
tgatcactctcac |
331 |
Q |
| |
|
||||||||||||| |
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| T |
6186936 |
tgatcactctcac |
6186948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 4243580 - 4243892
Alignment:
| Q |
19 |
tttctaccgttgaattctctaactccgttatcagtctttgtgttaccggtgaaatatcgaatcaataaaacaaccaagactaaaaacgcgacaaccaaac |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| | ||||||||| |||||| |||||| |
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| T |
4243580 |
tttctaccgttgaactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaac |
4243679 |
T |
|
| Q |
119 |
caacttttccgatcgatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcgtcgatgtcattgcttatcgaactcatcatttgtccccatgt |
218 |
Q |
| |
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|||| |||||||| || ||||| || ||||||||||||||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
4243680 |
caacctttccgattgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgt |
4243779 |
T |
|
| Q |
219 |
tgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctaca |
318 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
4243780 |
tgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctaca |
4243879 |
T |
|
| Q |
319 |
tgatcactctcac |
331 |
Q |
| |
|
||||| ||||||| |
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|
| T |
4243880 |
tgatcgctctcac |
4243892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 38358424 - 38358526
Alignment:
| Q |
192 |
tatcgaactcatcatttgtccccatgttgtgttcataccgaccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaa |
291 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| | || || ||||| |||||||| | ||||||||||| |||||||||| ||||| | ||||||| |
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|
| T |
38358424 |
tatcgagctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaa |
38358523 |
T |
|
| Q |
292 |
gga |
294 |
Q |
| |
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||| |
|
|
| T |
38358524 |
gga |
38358526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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