View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_low_15 (Length: 250)
Name: NF1832_low_15
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_low_15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 37701714 - 37701951
Alignment:
| Q |
13 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
112 |
Q |
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| T |
37701714 |
gagacatatagaacaacaataaaccaattcaaacagacccttagtctaacttaagtaaccatgtaactaattattgtaactaactattacaactaataat |
37701813 |
T |
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| Q |
113 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
212 |
Q |
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| T |
37701814 |
actatttctcaacaaaatccaaattcattcattatctagtgtaataaacttcaacttaaaccagtaataaatcatcaaaattctgaccaatcatgtggaa |
37701913 |
T |
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| Q |
213 |
tttcttaagtaaacaacattactccatatactatatcc |
250 |
Q |
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| T |
37701914 |
tttcttaagtaaacaacattactccatatactatatcc |
37701951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 10223519 - 10223490
Alignment:
| Q |
73 |
atgtaactaattattgtaactaactattac |
102 |
Q |
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| T |
10223519 |
atgtaactaattattgtaactaactattac |
10223490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 14201304 - 14201342
Alignment:
| Q |
77 |
aactaattattgtaactaactattacaactaataatact |
115 |
Q |
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| T |
14201304 |
aactaattattgtaactaactattacatctaataatact |
14201342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 29051325 - 29051289
Alignment:
| Q |
74 |
tgtaactaattattgtaactaactattacaactaata |
110 |
Q |
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| T |
29051325 |
tgtaactaattattgtaactaactattacatctaata |
29051289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 486588 - 486634
Alignment:
| Q |
57 |
tctaacttaagtaacca-tgtaactaattattgtaactaactattac |
102 |
Q |
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| T |
486588 |
tctaacttaactaaccagtgtaactgattattgtaactaactattac |
486634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 37864137 - 37864101
Alignment:
| Q |
74 |
tgtaactaattattgtaactaactattacaactaata |
110 |
Q |
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| T |
37864137 |
tgtaactaattattgtaaccaactattacatctaata |
37864101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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