View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1832_low_18 (Length: 246)

Name: NF1832_low_18
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1832_low_18
NF1832_low_18
[»] chr8 (1 HSPs)
chr8 (174-242)||(23995578-23995646)
[»] chr2 (1 HSPs)
chr2 (176-245)||(2199981-2200051)
[»] chr1 (2 HSPs)
chr1 (176-206)||(2489403-2489433)
chr1 (174-206)||(46271354-46271386)
[»] chr6 (1 HSPs)
chr6 (216-245)||(23604505-23604534)
[»] chr5 (1 HSPs)
chr5 (216-245)||(21239142-21239171)
[»] chr4 (1 HSPs)
chr4 (216-245)||(26866828-26866857)
[»] chr3 (1 HSPs)
chr3 (217-245)||(16776852-16776880)


Alignment Details
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 23995578 - 23995646
Alignment:
Q  174 attaccttcgtccctaattataaaacccttttgtnnnnnnnntttgtctctttttataagacccctttg 242  Q
    ||||||| |||||||||||||||||||||||||         |||||| ||||||||||||||||||||    
T  23995578 attacctccgtccctaattataaaacccttttgaaaaaataatttgtccctttttataagacccctttg 23995646  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 2199981 - 2200051
Alignment:
Q  176 taccttcgtccctaattataaaaccctttt-gtnnnnnnnntttgtctctttttataagacccctttgcta 245  Q
    ||||| ||||||||||||||| |||||||| ||        ||||||||||||||||||||||||||||||    
T  2199981 tacctccgtccctaattataagaccctttttgtgaattttttttgtctctttttataagacccctttgcta 2200051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 2489433 - 2489403
Alignment:
Q  176 taccttcgtccctaattataaaacccttttg 206  Q
    |||||||||||||||||||||||||||||||    
T  2489433 taccttcgtccctaattataaaacccttttg 2489403  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 46271386 - 46271354
Alignment:
Q  174 attaccttcgtccctaattataaaacccttttg 206  Q
    ||||||||||||||||||||||| |||||||||    
T  46271386 attaccttcgtccctaattataagacccttttg 46271354  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 23604505 - 23604534
Alignment:
Q  216 tttgtctctttttataagacccctttgcta 245  Q
    ||||||||||||||||||||||||||||||    
T  23604505 tttgtctctttttataagacccctttgcta 23604534  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 21239142 - 21239171
Alignment:
Q  216 tttgtctctttttataagacccctttgcta 245  Q
    ||||||||||||||||||||||||||||||    
T  21239142 tttgtctctttttataagacccctttgcta 21239171  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 26866857 - 26866828
Alignment:
Q  216 tttgtctctttttataagacccctttgcta 245  Q
    ||||||||||||||||||||||||||||||    
T  26866857 tttgtctctttttataagacccctttgcta 26866828  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 245
Target Start/End: Complemental strand, 16776880 - 16776852
Alignment:
Q  217 ttgtctctttttataagacccctttgcta 245  Q
    |||||||||||||||||||||||||||||    
T  16776880 ttgtctctttttataagacccctttgcta 16776852  T

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