View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1832_low_2 (Length: 580)

Name: NF1832_low_2
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1832_low_2
NF1832_low_2
[»] chr7 (2 HSPs)
chr7 (90-580)||(34374686-34375177)
chr7 (240-328)||(34289361-34289449)


Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 90 - 580
Target Start/End: Complemental strand, 34375177 - 34374686
Alignment:
Q  90 tcgagagagaagaaaatatcaaatataggggcagataattttatcacgcaccttgtctatttggttgttccatgactcatatggtccacaaatgctaaac 189  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34375177 tcgagagagaaaaaaatatcaaatataggggcagataattttatcacgcaccttgtctatttggttgttccatgactcatatggtccacaaatgctaaac 34375078  T
Q  190 ttcacaagatgtggaaga-ctttcaagtgaagtgacactaactgagtaaacgagtttgtcacgtcttttctattttctgtgctagcaactatggtcttta 288  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34375077 ttcacaagatgtggaagatctttcaagtgaagtgacactaactgagtaaacgagtttgtcacgtcctttctattttctgtgctagcaactatggtcttta 34374978  T
Q  289 acttctcacacttttcaattttgatggttttcaagtgtgaaggaactaagaaattgactttttctttgtgaaaaaatataaactctaaaaaatcacaagt 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |    
T  34374977 acttctcacacttttcaattttgatggttttcaagtgtgaaggaactaagaaattgactttttctttgtgaaaaaatataaactctagaaaatcacattt 34374878  T
Q  389 tcctatgcacaagtcttctagaacaggcatatgactttttcctttattcatcttcatttcaaaattagaaggtatatgatcctctgttgctcgtgttctg 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| |     
T  34374877 tcctatgcacaagtcttctagaacaggcatatgactttttcctttcttcatcttcatttcaaaactagaaggtatatgatcctctggtgctcgtgttatt 34374778  T
Q  489 tatagttcatgttaatacaagaaatattctcaatatcttctgaatattatatcacagactacatgcataacggtgaaaaatacatgtcatga 580  Q
     ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34374777 gatacttcctgttaatacaagaaatattatcaatatcttctgaatattatatcaaagactacatgcataacggtgaaaaatacatgtcatga 34374686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 34289361 - 34289449
Alignment:
Q  240 gagtttgtcacgtcttttctattttctgtgctagcaactatggtctttaacttctcacacttttcaattttgatggttttcaagtgtga 328  Q
    |||||| ||| ||||| ||| |||||| |  |||| | ||||| ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  34289361 gagtttatcatgtcttctctcttttctcttgtagctattatggcctttaacttgtcacacttttcaattttgatcgttttcatgtgtga 34289449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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