View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1832_low_23 (Length: 211)
Name: NF1832_low_23
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1832_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 26593729 - 26593552
Alignment:
| Q |
13 |
cacagaacatcagaggcattaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaag |
112 |
Q |
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| T |
26593729 |
cacagaacatcagaggcatcaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaag |
26593630 |
T |
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| Q |
113 |
agacggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatattt |
190 |
Q |
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| T |
26593629 |
agacggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatattt |
26593552 |
T |
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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 34750383 - 34750208
Alignment:
| Q |
15 |
cagaacatcagaggcattaaaagtgacaccccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaagag |
114 |
Q |
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||||| || |||||||| |||| || ||||||||||||||||||||||||| ||| ||| || ||| ||||||| || ||||||| |||| ||| ||||| |
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| T |
34750383 |
cagaatataagaggcatcaaaattggcaccccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattccgatccgacataagag |
34750284 |
T |
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| Q |
115 |
acggtgtgatagcaccaatgctcaaattctttgacatgaccaactcatttttctctattgatgcatacccatattt |
190 |
Q |
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|| ||||||| |||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||| |
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| T |
34750283 |
acagtgtgatggcaccaatgctcaaattcttaaacagaaccaattcatttttcttcattgatgcatacccatattt |
34750208 |
T |
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