View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1832_low_3 (Length: 578)

Name: NF1832_low_3
Description: NF1832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1832_low_3
NF1832_low_3
[»] chr4 (5 HSPs)
chr4 (259-563)||(55330661-55330965)
chr4 (14-207)||(55331017-55331210)
chr4 (259-445)||(55336217-55336403)
chr4 (108-210)||(55336449-55336551)
chr4 (500-563)||(55336093-55336156)
[»] chr2 (25 HSPs)
chr2 (263-550)||(8375852-8376139)
chr2 (263-550)||(8395535-8395825)
chr2 (334-550)||(8411867-8412083)
chr2 (334-550)||(8433965-8434181)
chr2 (271-436)||(8431120-8431285)
chr2 (263-550)||(8405747-8406037)
chr2 (263-423)||(8439091-8439251)
chr2 (334-546)||(8416952-8417164)
chr2 (334-420)||(8417215-8417301)
chr2 (5-208)||(8395289-8395492)
chr2 (5-208)||(8406080-8406283)
chr2 (263-441)||(8403900-8404078)
chr2 (504-563)||(8368105-8368164)
chr2 (504-563)||(8401246-8401305)
chr2 (504-563)||(8403778-8403837)
chr2 (504-563)||(8422823-8422882)
chr2 (107-208)||(8439297-8439398)
chr2 (133-195)||(8368479-8368541)
chr2 (133-195)||(8400869-8400931)
chr2 (110-156)||(8404185-8404231)
chr2 (133-195)||(8422446-8422508)
chr2 (504-550)||(8431018-8431064)
chr2 (107-208)||(8375705-8375806)
chr2 (107-208)||(8412200-8412301)
chr2 (107-208)||(8434298-8434399)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 259 - 563
Target Start/End: Complemental strand, 55330965 - 55330661
Alignment:
Q  259 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55330965 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaat 55330866  T
Q  359 atagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcag 458  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330865 atagcattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcag 55330766  T
Q  459 ctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtgg 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55330765 ctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtgg 55330666  T
Q  559 tggat 563  Q
    |||||    
T  55330665 tggat 55330661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 55331210 - 55331017
Alignment:
Q  14 agaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331210 agaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggaga 55331111  T
Q  114 aagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55331110 aagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 55331017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 259 - 445
Target Start/End: Complemental strand, 55336403 - 55336217
Alignment:
Q  259 tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat 358  Q
    |||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||| || |  ||||| |||||||| ||||| ||||||||||||    
T  55336403 tagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaat 55336304  T
Q  359 atagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaac 445  Q
    |||||||| ||| ||||||||||| | ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55336303 atagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaac 55336217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 55336551 - 55336449
Alignment:
Q  108 tggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc 207  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  55336551 tggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaaccttctgtttggtggcc 55336452  T
Q  208 tgc 210  Q
    |||    
T  55336451 tgc 55336449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 500 - 563
Target Start/End: Complemental strand, 55336156 - 55336093
Alignment:
Q  500 aatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 563  Q
    |||| |||||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  55336156 aatggttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggat 55336093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 263 - 550
Target Start/End: Original strand, 8375852 - 8376139
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    |||||||| |||||| | ||||| |||| |||| |||| |||||| |||||||  | || |  |||||   |||||||||||| ||||||||||| ||||    
T  8375852 aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag 8375951  T
Q  363 cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctat 462  Q
    |||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||  |||||||||| |    |||| | || ||| |    
T  8375952 cattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacatttgtaggtagtggttctttggctgcttt 8376051  T
Q  463 agttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtataga 550  Q
     ||| || |  ||||||||||||| | | ||||| | ||| ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8376052 tgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 263 - 550
Target Start/End: Original strand, 8395535 - 8395825
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || |||   |||||   |||||||||||| ||||||||||| ||||    
T  8395535 aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag 8395634  T
Q  363 cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaa---caattctgttgcagc 459  Q
    | || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||||| | || ||    | |||| | || ||    
T  8395635 ctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgc 8395734  T
Q  460 tatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtataga 550  Q
      | ||| || |  ||||||||||||| | | ||| | | ||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  8395735 atttgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtataga 8395825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 550
Target Start/End: Complemental strand, 8412083 - 8411867
Alignment:
Q  334 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 433  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| ||    
T  8412083 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8411984  T
Q  434 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 533  Q
    |||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  || ||| ||||||| |||||||||||| |||| ||||    
T  8411983 tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg 8411884  T
Q  534 tatttgaaatgtataga 550  Q
    | |||||||||||||||    
T  8411883 tttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 334 - 550
Target Start/End: Complemental strand, 8434181 - 8433965
Alignment:
Q  334 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 433  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| ||    
T  8434181 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca 8434082  T
Q  434 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 533  Q
    |||||||| || | |||| | || ||  | ||| || || || |||||||||| | | |||  || ||| ||||||| |||||||||||| |||| ||||    
T  8434081 tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg 8433982  T
Q  534 tatttgaaatgtataga 550  Q
    | |||||||||||||||    
T  8433981 tttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 271 - 436
Target Start/End: Complemental strand, 8431285 - 8431120
Alignment:
Q  271 atggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaag 370  Q
    ||||||||| |||||||||| |||| |||| || ||| |||||||  | || |  |||||  ||||||||||||| ||||||||||| |||||||| |||    
T  8431285 atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag 8431186  T
Q  371 gttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcattt 436  Q
    || ||||||||||| |||||||| || ||||||||| | ||||||||||||||||| ||| |||||    
T  8431185 gtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctacattt 8431120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 263 - 550
Target Start/End: Complemental strand, 8406037 - 8405747
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    ||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || |||   |||||   |||||||||||| ||||||||||| ||||    
T  8406037 aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag 8405938  T
Q  363 cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaa---caattctgttgcagc 459  Q
    | || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||||| | || ||    | |||| | || ||    
T  8405937 ctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgc 8405838  T
Q  460 tatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtataga 550  Q
      | ||| || |  ||||||||||||| | | ||| | | ||| |||||||||||||||||||| |||| ||||| |||||||||||||||    
T  8405837 atttgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 263 - 423
Target Start/End: Complemental strand, 8439251 - 8439091
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    |||||||| |||||| | ||||| |||| |||| |||| |||||| |||||||  | || |  |||||   |||||||||||| ||||||||||| ||||    
T  8439251 aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag 8439152  T
Q  363 cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctat 423  Q
    |||| ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||||||    
T  8439151 cattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat 8439091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 334 - 546
Target Start/End: Complemental strand, 8417164 - 8416952
Alignment:
Q  334 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca 433  Q
    |||||||||| | || |||||||| ||||| || |||||  ||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| ||    
T  8417164 tgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgccgctattggatctaca 8417065  T
Q  434 tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg 533  Q
    ||| |||| ||    ||| | || ||  | ||| || || ||||||||||||| | | ||| ||| ||| ||||||| |||||||||||| |||| ||||    
T  8417064 tttataggcaatggctctttggctgcctttgttcctctattggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatgg 8416965  T
Q  534 tatttgaaatgta 546  Q
    | |||||||||||    
T  8416964 tttttgaaatgta 8416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 8417301 - 8417215
Alignment:
Q  334 tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagc 420  Q
    |||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| |||||||||||    
T  8417301 tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagc 8417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 8395289 - 8395492
Alignment:
Q  5 gaggagcagagaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtt 104  Q
    ||||| || ||||| ||||||||||| |||||||| |||| |||| | ||  |||  ||| | |||||||||||||  |  ||  ||||||| ||| ||     
T  8395289 gaggaacaaagaaatgctacaagattgttcaaacaacttcaaagcaatattcaaactacaatagctcttggaaatcctagtgaggaagatgttaagggtg 8395388  T
Q  105 tcatggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtg 204  Q
      ||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |  |||||||||||||  |||||||||| | | ||||||  ||||||    
T  8395389 caatggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtg 8395488  T
Q  205 gcct 208  Q
    ||||    
T  8395489 gcct 8395492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 8406283 - 8406080
Alignment:
Q  5 gaggagcagagaaacgctacaagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtt 104  Q
    ||||| || ||||| ||||||||||| |||||||| |||| |||| | ||  |||  ||| | |||||||||||||  |  ||  ||||||| ||| ||     
T  8406283 gaggaacaaagaaatgctacaagattgttcaaacaacttcaaagcaatattcaaactacaatagctcttggaaatcctagtgaggaagatgttaagggtg 8406184  T
Q  105 tcatggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtg 204  Q
      ||||| ||||||||||| ||||||||||| ||||||||||| |||||||| |  |||||||||||||  |||||||||| | | ||||||  ||||||    
T  8406183 caatggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtg 8406084  T
Q  205 gcct 208  Q
    ||||    
T  8406083 gcct 8406080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 263 - 441
Target Start/End: Complemental strand, 8404078 - 8403900
Alignment:
Q  263 aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag 362  Q
    ||||||||||||| |  ||| || ||||| ||| |||  || || |||||||| ||||| |  ||||||||||| |||||||| ||| | || ||||| |    
T  8404078 aataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattg 8403979  T
Q  363 cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtagg 441  Q
    |||||||| ||||||||||||||||||||   || || ||  | || ||||||||||||||||| ||  ||||||||||    
T  8403978 cattaaagattaacaagagtttagcaattttaggacctttgttaacaggaattgcagctatagggtcatcatttgtagg 8403900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 8368164 - 8368105
Alignment:
Q  504 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 563  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||    
T  8368164 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggat 8368105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 8401246 - 8401305
Alignment:
Q  504 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 563  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||    
T  8401246 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggat 8401305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Complemental strand, 8403837 - 8403778
Alignment:
Q  504 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 563  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||    
T  8403837 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggat 8403778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 504 - 563
Target Start/End: Original strand, 8422823 - 8422882
Alignment:
Q  504 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggat 563  Q
    ||||||| |||||||||||| |||||||||| | |||||||||||||  |||||||||||    
T  8422823 cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggat 8422882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8439398 - 8439297
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || |||||||||||||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8439398 atggaaaaggttttggcacttgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8439299  T
Q  207 ct 208  Q
    ||    
T  8439298 ct 8439297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 8368541 - 8368479
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8368541 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8368479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 8400869 - 8400931
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8400869 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8400931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 8404231 - 8404185
Alignment:
Q  110 gagaaagttttggcacttgacaaagcttatccacttcctttattagg 156  Q
    ||||| |||||||| ||||| ||||| ||||||||||||||||||||    
T  8404231 gagaaggttttggctcttgataaagcctatccacttcctttattagg 8404185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 8422446 - 8422508
Alignment:
Q  133 agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc 195  Q
    |||||||||||| ||||| ||||| |||||| |||||||||| |||  ||||||| |||||||    
T  8422446 agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc 8422508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 504 - 550
Target Start/End: Complemental strand, 8431064 - 8431018
Alignment:
Q  504 cttttgaacatggtggacaaattggtatggtatttgaaatgtataga 550  Q
    ||||||| |||||||||||| |||| ||||| |||||||||||||||    
T  8431064 cttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 8375705 - 8375806
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8375705 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8375804  T
Q  207 ct 208  Q
    ||    
T  8375805 ct 8375806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8412301 - 8412200
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8412301 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8412202  T
Q  207 ct 208  Q
    ||    
T  8412201 ct 8412200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 8434399 - 8434298
Alignment:
Q  107 atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc 206  Q
    ||||| || ||||||||| |||| ||||| || || ||||||||||| || |  |||||||||||||  ||| |||||| | ||||||||  ||||||||    
T  8434399 atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc 8434300  T
Q  207 ct 208  Q
    ||    
T  8434299 ct 8434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University